Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01072 ATGAGGAAAGAGGCTCGGCCGGATCTTATAACCTTTGTTGGTGTTCTAGCAGCTTGCAGCCGTGGGCTTCTGCTCAATGAAGGGCAAGCATTTTATGATATGATGATGAGGGATTATGGTATCAATCCAACTGTTCAACACTACACATGCATGGAAGTTGTGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGAACGACACAAGTGTGGAACCAATGTTTGATTATCACGGCTTCGATGAAGGGTATAACATTGACTCACTTGAAGACATTGGGATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTGCATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAAAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTGCAAAATAATTACGGCATTGGAAACCTTAAGAGAAAACCTACACACGAGACAAGGTGTGGCTGCAGTGCAATGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTTTATTTCCTATTTTTCTGATGAACACAATCATCCGCTTCTGGATCCTCGGTTGACTGGATTGCTCCCTGGGCATAGATTCatgtccgaggctgatattggccacatgGCTGACCTCGCTTCTGTGAATGGGAGACCCAGTTTGCAAACCTATTTTCAACAGTTAGAGAGGAGTGCTGTCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACTGGCTCTTATGTGATTTACTCTGTCGATTTGGACCGAATGTCAAATGAGATGTGGTGTGTATTCTGTTGTGACAATGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCACTTGGCATACCTTGTGAACACATAGTTTGCGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATATGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTACACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATATTGTAAGAGATGGTGTGtga 1365 0.4051 MRKEARPDLITFVGVLAACSRGLLLNEGQAFYDMMMRDYGINPTVQHYTCMEVVGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDENDTSVEPMFDYHGFDEGYNIDSLEDIGMIEFWNIRDEDVCHFHFSDVDIAFEFYNRYARTRGFSARKNRSRKSRAGALKLKNFVCHREGFRLQNNYGIGNLKRKPTHETRCGCSAMMEIRVDAPSGRWFISYFSDEHNHPLLDPRLTGLLPGHRFMSEADIGHMADLASVNGRPSLQTYFQQLERSAVNVYTLSIFHMFQPILVRAASMKVINMRQTGSYVIYSVDLDRMSNEMWCVFCCDNEMEFNCSCMRMESLGIPCEHIVCVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFTREMAMNLLKQFKEEDAAQKELVNDADIVRDGV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01072 454 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Adu02g01072 454 SMART 26again6 336 363 IPR006564 GO:0008270
Adu02g01072 454 ProSiteProfiles Zinc finger SWIM-type profile. 313 361 IPR007527 GO:0008270
Adu02g01072 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 255 381 - -
Adu02g01072 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 133 247 - -
Adu02g01072 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 255 381 IPR031052 GO:0006355
Adu02g01072 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 133 247 IPR031052 GO:0006355
Adu02g01072 454 Pfam FAR1 DNA-binding domain 142 232 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01072 Adu-Chr2 20244997 20247564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01072 5 51 Glycoside Hydrolase AT3G49170 38.298 6.82e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu02g01072 FAR1 5.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01072 - - ahf:112723376 384.415