Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01054 ATGGCACCACCCAATGCAAATGTGAAAGCGGCCTATCGTGCGATGGCAGGTCTTGGGATTTCTGAATCACAAGTGAAACCAGTACTAAAGAAGCTCCTTAAATTGTATGATAAAAATTGGGCACTTATTGAAGAAGAGAATTATAGAGCTCTGGCAGATGCCATATTTGAGCCTGATGACGAAAATCAGGTCCTAAACCAGAAAAGGGTTCCAGAACAGAAAAAGAAAAAGAAGAAAGTTAACGAAGAAGAGATGGAGAACGAAGAAGAAGCTGAGATGAATTTGGAGTCAGCCCGCCCTTTGAAGAGAGTGCGTCTAAGAGGCCAAGAGAGTCAGTCTTTGCATCCTACAGCTAGCTGTTCCCCCACACTTGCCACCTCCCCATCAAAACAATCTGACACATCTGGTGGAAATTTGAGAACTGAAGTGCACCCAGCTCCAACACAAGATGTTATTGTTGGCAAGGGAAAACAACCCGTGTCACCCGATCTTAATCCCAGAAGAAGGAGATTGATATCTGAATCCGAAAGAGCATCCCAATCAGTCCCTTCTAAAGATCCAACAGCCAAACCAGAGCTATCAAGTGTTGGGGGCTCATCATTGAACAAAAATGCAGCTGGAAAGCAAAATGGTCATGTCAATATGGCATCATCACAATCCACAGCTGGAGATATTCTTCCTTCCTCAAATGAAAGAGCTACATCTAGTATAGAGATAGCCTCGTCTACTAAGGGAGAGGTAAAAATTTCTCTGAGCTGCAGCTCAGCTGTTGGGGGACCAGATTTTCATATGCCTAGTCAAGATCAAATTCTAAAAATGATGGAGGATAAATGTCTGCATTCATATAAAATCACTGATCCGAATTTTTCTGTTCCGAAACTGTTGAAAGATATATGTGACTGTGTCCTGGAATTCAAAATCTATTCAGATGGTTCCCAGGAAGGAGCTCTCATAAGATCACGGGACGATATGTTAAAGGAATCTGAGACACATGGCACACTGAGTGTCACAAGAAATAAGGATTTGGATGCGCTTTCTCTTCCACCAAGTGGAACAATTCATGTTGAGTCTTCTGCCACCTTGCCATCTCCCCGAAATCCCTTTTCTCTTGCCAACCGCACTGGTCAGGTTGATGCTGTACTGGTTTCCAGGGATGCTATACATCATTTGTCAGAAAATGATGATGGAATGGAGTTGGAGGATCCTACTTCCTCAAATTCACGCAGTTTAGTGGTTGTTCCACAGCATGAACTTACAGCTGATGATATACGGTCGATTCACGATGTTAATGACCTCACAAAAGCAGAGGAAAGTGTTCAAATTTCATGGGTCAATGAAGTTACTAACGATTTCCTGCCCCCTTTTCACTACATACCCCAAAACCTTGTGTTCCAAAATGCTTCTGTGAACATTTTGCTATCTCGTATTGGGGATGAGGACTGTTGCTCATCTTGTGTGGGAAATTGTGTCTCATCACCTACACCCTGTGCCTGTGCAAACAAAAATGGAGGGGAATTTGCATATAATGCACGAGGCCTATTGAAGGAAGGCTTTTTGGAAGGGTGCATTGCCATCAGCCGTAACCCTAAACGATATTACGCCTTTTGCAAAGACTGCCCAATTGAAAGATCTAAGAATGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAATTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGCAATCGGATTGTTCAGCGTGGAATAACTTGCAATCTGCAGGTATTTTTCACTCCGGAAGGAAAAGGATGGGGTCTTCGTACTTTAGAAGAGCTGCCAAAAGGTGCATTTGTGTGCGAATTTGTTGGAGAGATATTAACTATTAAAGAGTTGCATGAGAGGAACATGAAACATGCTGTAACTGGGGAATATACATACCCGGTTCTACTGGATGCAGATTGGGGTTCAAGATTTGTGAAGGATGAAGAAGCTCTAAGCTTGGATGCTGCTTCCTTTGGTAATGCTGCTAGGTTTATCAATCACAGGTGTTATGATTCTAACTTGGTTGAGATCCCTGTTGAAATTGAAGGCCCAGGGCATCACTACTATCATTTTGCCTTGTTCACTTGCAGAAAAGTAGCAGCAAAGGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATAACCCTATCAAGCCGTTCCAGTGCAAATGTGGAAGTAAATTCTGTAGGAATATGAAGCGTTCAAATAGGTCAGTGAGGTCTTCACCATCAAATGCAAGATGTTCTCTTTGA 2289 0.426 MAPPNANVKAAYRAMAGLGISESQVKPVLKKLLKLYDKNWALIEEENYRALADAIFEPDDENQVLNQKRVPEQKKKKKKVNEEEMENEEEAEMNLESARPLKRVRLRGQESQSLHPTASCSPTLATSPSKQSDTSGGNLRTEVHPAPTQDVIVGKGKQPVSPDLNPRRRRLISESERASQSVPSKDPTAKPELSSVGGSSLNKNAAGKQNGHVNMASSQSTAGDILPSSNERATSSIEIASSTKGEVKISLSCSSAVGGPDFHMPSQDQILKMMEDKCLHSYKITDPNFSVPKLLKDICDCVLEFKIYSDGSQEGALIRSRDDMLKESETHGTLSVTRNKDLDALSLPPSGTIHVESSATLPSPRNPFSLANRTGQVDAVLVSRDAIHHLSENDDGMELEDPTSSNSRSLVVVPQHELTADDIRSIHDVNDLTKAEESVQISWVNEVTNDFLPPFHYIPQNLVFQNASVNILLSRIGDEDCCSSCVGNCVSSPTPCACANKNGGEFAYNARGLLKEGFLEGCIAISRNPKRYYAFCKDCPIERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRIVQRGITCNLQVFFTPEGKGWGLRTLEELPKGAFVCEFVGEILTIKELHERNMKHAVTGEYTYPVLLDADWGSRFVKDEEALSLDAASFGNAARFINHRCYDSNLVEIPVEIEGPGHHYYHFALFTCRKVAAKEELTWDYGIDFDDHDNPIKPFQCKCGSKFCRNMKRSNRSVRSSPSNARCSL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01054 762 ProSiteProfiles SET domain profile. 586 719 IPR001214 GO:0005515
Adu02g01054 762 Pfam Ubiquitin-binding WIYLD domain 8 61 IPR018848 GO:0018024
Adu02g01054 762 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 758 IPR025776 -
Adu02g01054 762 MobiDBLite consensus disorder prediction 110 142 - -
Adu02g01054 762 CDD SET_SETDB-like 453 719 - -
Adu02g01054 762 MobiDBLite consensus disorder prediction 66 84 - -
Adu02g01054 762 SMART preset_2 429 570 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu02g01054 762 Coils Coil 74 98 - -
Adu02g01054 762 Gene3D - 1 61 IPR043017 -
Adu02g01054 762 SMART set_7 586 725 IPR001214 GO:0005515
Adu02g01054 762 MobiDBLite consensus disorder prediction 176 230 - -
Adu02g01054 762 MobiDBLite consensus disorder prediction 92 109 - -
Adu02g01054 762 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 752 - -
Adu02g01054 762 Pfam SET domain 598 719 IPR001214 GO:0005515
Adu02g01054 762 Pfam Pre-SET motif 433 578 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu02g01054 762 Gene3D SET domain 416 727 IPR046341 -
Adu02g01054 762 ProSiteProfiles Pre-SET domain profile. 481 583 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu02g01054 762 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 752 - -
Adu02g01054 762 SUPERFAMILY SET domain 439 742 IPR046341 -
Adu02g01054 762 MobiDBLite consensus disorder prediction 66 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01054 Adu-Chr2 18702740 18712241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g01054 431 742 Su(var)3-9 homologs AT1G73100 30.091 1.41e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Adu02g01054 Pre-SET 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01054 - - gmx:100787369 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g01054 02 18702740 18712241 Adu02g01054 02 18702740 18712241 ECH
Adu06g00288 06 3502402 3509300 Adu02g01054 02 18702740 18712241 PCT
Adu02g01054 02 18702740 18712241 Adu06g00064 06 828213 834577 PCT