Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00816 ATGACCCAACGGTTAACCGGTGAACCGGCTAAACCACATCATTCATCATCCAGGCAACTTCCTCCAAGTTTGATCCCTCGGCCAGCTCCGGAAGTCACTGTTACCGGCGTTGTCCCAGTTGCTCACCTCGCCTGCGTCGCTGGCCTCGTCCGTGTCGGTGTGGCCGTTCAGAAGGCGCATAGAGGAAGTTTCTCCTTTCTTCTCTTTCTCTGTAATAGAAGGAAGTTCCGCCGTCGCCGACATCGTTGCTCCATTCGACCTCTCCTCCTGCATCGCTACTCCGTTCAACTCCTGATTGGCTTTCATAAGGATTCTGATGAAGTGGCAAAATCTGCTGAAAACCAGCAAACAGAGCAAGTGTGCAGCTTCTTCAGGAAACCAATTAATAAGAAGAATATAAGGAAACGTGCTATTGATAGTGAAGATGAGGGTGATGATTCAAAAAATGAAAACTCTTTGTTGCATGCTCAGAAGAAGGCTCCGAAGCCTGACAATAAGTTGTACTTTTCAACTGGCCCCTCGAAAAGCTGTGTGTCTACTGACCCAAGTGAAGAATCTGAAAAAACCGGTTTTCATTTCGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACAGAGACCGACTTTTCCAGAGATGCTCGTGCGATCCGTGAACGAGCTCTTAAGCAAGCAGAAGAGAGTTTGAAGGGGAAAGGCACAAGTTCTGAGGATGGCAAACTATATAAGGGAATGAACAGTTACAAAGATTACAAGGCCGGCTTCCGGAGAGAGCAAACAATTGCTAGCGAAAAGGCTGGTGGTTCACATGGTCCTCTCAGGGCTTCGGCTCATATAAGAGTTTCAGCGAGATTCGATTATCAGCCTGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCCTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAGGCAAGGAGGATGAGATTGGCTGCAGGTGAAGATGCGGACGAGGAAAGTGCTGATTTAGCTGATAGTGACGATGAAGATGCATTGCCATTTGCATGTTTTATTTGTAGGAAGCCTTTTGCGGATCCTGTTGTAACCAAGTGCAGGCACTACTTCTGTGAGCATTGCGCCTTAAAGCATCATGCAAAGAACAAGAAGTGTTTTGTGTGCAACCAACCAACTCTCGGCATTTTCAATGTTGCCCATGAGATACGAAAGAAGATGGCTGAGGATAAAGATAAATGA 1296 0.4614 MTQRLTGEPAKPHHSSSRQLPPSLIPRPAPEVTVTGVVPVAHLACVAGLVRVGVAVQKAHRGSFSFLLFLCNRRKFRRRRHRCSIRPLLLHRYSVQLLIGFHKDSDEVAKSAENQQTEQVCSFFRKPINKKNIRKRAIDSEDEGDDSKNENSLLHAQKKAPKPDNKLYFSTGPSKSCVSTDPSEESEKTGFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQAEESLKGKGTSSEDGKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARRMRLAAGEDADEESADLADSDDEDALPFACFICRKPFADPVVTKCRHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDKDK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00816 431 MobiDBLite consensus disorder prediction 135 219 - -
Adu02g00816 431 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Adu02g00816 431 SUPERFAMILY RING/U-box 369 412 - -
Adu02g00816 431 Coils Coil 423 431 - -
Adu02g00816 431 Gene3D - 291 325 - -
Adu02g00816 431 MobiDBLite consensus disorder prediction 181 201 - -
Adu02g00816 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 427 IPR013083 -
Adu02g00816 431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 110 429 - -
Adu02g00816 431 PANTHER ZINC FINGER PROTEIN 183 110 429 IPR039971 -
Adu02g00816 431 SUPERFAMILY CCCH zinc finger 292 324 IPR036855 GO:0046872
Adu02g00816 431 SMART ring_2 370 407 IPR001841 -
Adu02g00816 431 ProSiteProfiles Zinc finger RING-type profile. 370 408 IPR001841 -
Adu02g00816 431 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Adu02g00816 431 MobiDBLite consensus disorder prediction 1 26 - -
Adu02g00816 431 CDD RING-HC_RNF113A_B 368 408 - -
Adu02g00816 431 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Adu02g00816 431 Pfam Zinc finger, C3HC4 type (RING finger) 369 411 - -
Adu02g00816 431 MobiDBLite consensus disorder prediction 135 162 - -
Adu02g00816 431 MobiDBLite consensus disorder prediction 1 22 - -
Adu02g00816 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 319 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00816 111 431 C2H2 Transcription Factor Family AT1G01350 70.717 7.92e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu02g00816 zf-C3HC4_3 6.7e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00816 K13127 - gmx:100787434 554.673