LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g00709	ATGACTGCAAAAACAGACTTGATCAGAGACATCAATTCAACCAAGCTGGCTTGGTCGTTGGTCGTGGGTGTTGCCCGATTGTATGAGTTTTCCAGCCAGTGGAACCAGAATGAAGTGTTTAGCTTGGAGATGGTCTTGCAAGATGAGCAGGGTGATAGAATTCATGCAACGATATGTAAGCCTGGCTTGGACTTATTCAGGGAAAGGATAAAAGAGCATGCCGTGTATAGTATGTGGAATTTTATTGTGAAAATTAACAATGAGAAGGTAAGGACAACTGCTCATAAGTACAAGCTTAGCTTCTATACAAAGACAGAGGTGGAAGTCCTTCCAATCGAGACTTTCGCTTTTAACCCATTCAAATTCTGCCCCTTTGCTGAACTTGAGTCAAATGCTCCAATGGATGGCAATTTTTTGTTTGATTACATAGGAGAGGTTGTTGGAAAAGAAGAAGCTATGGGGATAATTACACGCACGGGTAAAGAAAGCAAGCGTATTGCACTACTGTTGGAAGATCTAGAGAAGCACAAGATTAAATGTACATTGTTCGGAGAATTGGTGGCCCAAGTGCTTCCACACCTCGAGCGAGATGATGGGGAGCCTTTCATAATGGTTGTTCAGCTTTTTAAGTCGAATGTATACTTAAATTCTGTGAATGTTCAAAGCACTTACTATGTCTCCAAATGTTACTTCAATCCAAACCTTCCCGAAGTTATTGACTTCAAGAAAAGATTGGCAGAGGAGGAAACCTCTTGCTGGATTGTGGGAAATATTGTGTCTTTAGAGGTCGATAAATATGACTGGTCCTATACGTCATGTAAGACATGTCCAAAGAAAATTCTAGAGAGCAAAGATAGGTACTGGTGTGATCATTGTAGGCGTGTAGGCTTCAAGGCTATGCTAAGGTATAGACTTCAAGTAATCGTCACTGATGAAAGCGGTTGGGTATATAGCATTTTAAAGATTTCAGATGATGAGTACCTCATGTCCATTTTTGGTCCTGCCAATTCTTCTTTCAATGCTTCTGATTCAGCAGTTGAGAGCAACTATGATAGCTCCTATGAGACTCCAGCCAAGAGGTCCTCTCCTGATATAGGTGATGGCTCGACAACAGAAGCAGGTGTGTCGGTAGATGTGCAAGCATCAACTAACAAAACTTTTAAGAGAAATTGTGGAAAGAAAAAGGTCGGCAATGGAACATCTGAAGGAACATGTGATGGAAGCAACATGATTAACATACCTCCTGAATTGCTTATCACTAATTATAATGATCCTATACAGGCAATGATTGAAGTAATCTATTCCGATTACATTATTGACATGGCTAACGAAAGCCACTTGAAAGATCGAGCTATTTTAGCTCCTACAATTCATGTTGTAGATGAGGCTAAAGTTTCGTGCTCCTCTCTCATCCACCATCTTTCTCACGCCAAAAAG	1437	0.4071	MTAKTDLIRDINSTKLAWSLVVGVARLYEFSSQWNQNEVFSLEMVLQDEQGDRIHATICKPGLDLFRERIKEHAVYSMWNFIVKINNEKVRTTAHKYKLSFYTKTEVEVLPIETFAFNPFKFCPFAELESNAPMDGNFLFDYIGEVVGKEEAMGIITRTGKESKRIALLLEDLEKHKIKCTLFGELVAQVLPHLERDDGEPFIMVVQLFKSNVYLNSVNVQSTYYVSKCYFNPNLPEVIDFKKRLAEEETSCWIVGNIVSLEVDKYDWSYTSCKTCPKKILESKDRYWCDHCRRVGFKAMLRYRLQVIVTDESGWVYSILKISDDEYLMSIFGPANSSFNASDSAVESNYDSSYETPAKRSSPDIGDGSTTEAGVSVDVQASTNKTFKRNCGKKKVGNGTSEGTCDGSNMINIPPELLITNYNDPIQAMIEVIYSDYIIDMANESHLKDRAILAPTIHVVDEAKVSCSSLIHHLSHAKK	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g00709	479	Pfam	PIF1-like helicase	394	464	IPR010285	GO:0000723\|GO:0003678\|GO:0006281
	Adu02g00709	479	SUPERFAMILY	Nucleic acid-binding proteins	120	248	IPR012340	-
	Adu02g00709	479	CDD	RPA1_DBD_A_like	19	107	-	-
	Adu02g00709	479	SUPERFAMILY	Nucleic acid-binding proteins	235	317	IPR012340	-
	Adu02g00709	479	Pfam	Replication factor-A C terminal domain	264	317	IPR013955	-
	Adu02g00709	479	CDD	RPA1_DBD_B_like	141	245	-	-
	Adu02g00709	479	MobiDBLite	consensus disorder prediction	350	375	-	-
	Adu02g00709	479	Pfam	Domain of unknown function DUF223	43	108	IPR003871	-
	Adu02g00709	479	PANTHER	BNAC07G49340D PROTEIN	28	233	-	-
	Adu02g00709	479	Gene3D	-	4	109	IPR012340	-
	Adu02g00709	479	PANTHER	REPLICATION FACTOR A 1, RFA1	28	233	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Adu02g00709	479	Gene3D	-	116	254	IPR012340	-
	Adu02g00709	479	SUPERFAMILY	Nucleic acid-binding proteins	7	111	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g00709	Adu-Chr2	10286652	10294039	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g00709	1	314	Core DNA Replication Machinery Family	AT5G08020	26.216	1.80e-17	83.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g00709	-		-	adu:107473519	815.839