Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00629 ATGGCTGTTATAACAACAACAAGGAGGACTGAAAGGTTCAGTCGTACAACACCACCAACATGTAAGTACTGGCTAGCTGGGAGATGCAACAGGAATCCTTGCAAATTTTTGCATAGCTTATCGACATTGCCATCCAATGTACATAATGCCAATATGACATATATGCATTCGAAGAATCCACATTTGTCTGCTGAGAATATGGCCAGTTCCTCTGTTAAGAAGCCAACAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGCAAATTGTGCACGAAAGGCTGTTGAGTGTGGATCAGAAGCTATGTCTGTTGAGAAGCCAACCCAGTGTGAACAAATGGATATATCCATTGAAAAGACTGAAAGTGTGGAAGAAGTGGCCACTGTTGCTAAGTCTCCTATGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTGCATGGTGACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGACGGGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCATTACCTGCTGGTTCAGATAAACTTTATTCTGGTAGCACTGATGGCACAGTTCGGGCATGGGATTGCAACACTGGCCATTGTGTTAACATGATCCATCTTAATTCTGAAGTTACCTCGCTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAGAACGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATACAGCTCTGATCCCAAACCTGAGTCTCCTTTCGAACTGGTTGCAACACTAGGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCAATGGACCATAGCATCAAGGTGTGGGACCTCGATACATTACAGTGCACAATGACACTTAACGGGCATACCGACGTAGTCACGTCACTTATTTGTTGGGGAGATTACTTATTATCGAGTTCATATGATTGCACAGTCAATGTTTGGGTGCGCACTGAGGAGGGAACTCTGAAAGTGGCATACACTCACACTGACGAAAATGCTATTCTTGGACTATATGGGATGACTGATGCAGAAGCCAAGCCAATATTGTTCTGCTCATGCAAAGACAAATCGGTTCGCATGTATGAATTGCCGACGTTTTTAGAGAGAGGTAGACTATTTACAAGACGAGAAGTTCGATCGTTCGAGATAGGTCCTGGTGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAGATGGTTGGAAGAGCCAAAGGTGCCAACTTCTTGA 1401 0.4411 MAVITTTRRTERFSRTTPPTCKYWLAGRCNRNPCKFLHSLSTLPSNVHNANMTYMHSKNPHLSAENMASSSVKKPTNCAPKAFKKPANCARKAVECGSEAMSVEKPTQCEQMDISIEKTESVEEVATVAKSPMEKSRSICKYWMTDNCVHGDLCQNLHSWFYGDGFTTLAKLHEHKKVVTGIALPAGSDKLYSGSTDGTVRAWDCNTGHCVNMIHLNSEVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRYSSDPKPESPFELVATLGGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLDTLQCTMTLNGHTDVVTSLICWGDYLLSSSYDCTVNVWVRTEEGTLKVAYTHTDENAILGLYGMTDAEAKPILFCSCKDKSVRMYELPTFLERGRLFTRREVRSFEIGPGGLFFTGDGTGLLNVWRWLEEPKVPTS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00629 466 Gene3D - 233 463 IPR015943 GO:0005515
Adu02g00629 466 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Adu02g00629 466 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 12 464 - -
Adu02g00629 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 338 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 375 416 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 165 204 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 291 329 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 244 281 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 419 456 IPR001680 GO:0005515
Adu02g00629 466 SMART WD40_4 332 369 IPR001680 GO:0005515
Adu02g00629 466 PANTHER - 12 464 IPR044715 -
Adu02g00629 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 332 - -
Adu02g00629 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Adu02g00629 466 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Adu02g00629 466 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Adu02g00629 466 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Adu02g00629 466 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Adu02g00629 466 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Adu02g00629 466 SUPERFAMILY CCCH zinc finger 134 159 IPR036855 GO:0046872
Adu02g00629 466 Gene3D - 110 232 IPR015943 GO:0005515
Adu02g00629 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 368 IPR001680 GO:0005515
Adu02g00629 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 204 - -
Adu02g00629 466 Pfam WD domain, G-beta repeat 169 204 IPR001680 GO:0005515
Adu02g00629 466 Pfam WD domain, G-beta repeat 334 368 IPR001680 GO:0005515
Adu02g00629 466 Pfam WD domain, G-beta repeat 293 329 IPR001680 GO:0005515
Adu02g00629 466 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Adu02g00629 466 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Adu02g00629 466 SUPERFAMILY WD40 repeat-like 168 459 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00629 Adu-Chr2 8559435 8561928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00629 230 420 Miscellaneous Gene Families AT5G08390 25.381 1.02e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu02g00629 WD40 3.9e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00629 - - ahf:112726849 928.702