Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00606 ATGGCTATTATAACAACAACAAAGAGGACTGAAGGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCAAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCGTCCAATGTATACTATAATGCCAATACCACATATAAGCATTCGAAGATGGCCAGTTCCTCTGCTAAGAAGGCCATCAAGAAGCCAGAAAATTGTGCACTAAGGGCTGTTGAGTATAGACCAGAAGCTATGTCTGTTGAGAAGCCAACTAAGTGTGAACAAAAGGCTGTTGCAGATGTGGAAGATGTGGCCACTGTTGCTAAGTGTGAACAAAAGAATTTGCATTCATGGTTTTATGGCGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGGATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTCACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTCTCTTGCTATTGGATGTCACAAGATGCTTTATTCTGGATCCATGGACCATACCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAACGGCCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTTCTTGTTATCGGCTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACGAAAATGCTGTTCTTGGACTCTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTGGGATAGGCCCTGGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTAAATGTGTGGAAATGGTTAGAAGAGCCTAAGGATATTTCCAAGATGGAAAATTGGACTCTGAATTGGAAATGCACTCAAGCTTTAAGTTCATGGTTGAAAAAATGTAAGGATGAAAATCTTGAGAGTTTGAATAAACTTTACCGTTTTAATGATGATGAGCATAATAAGTCTAATGTGCCAATTGAATTATTTGAGAAGACACCCAACTTGGAAACAATGGAAGTAAGCTATTACTATGATGAAACCCTCAAAAATATATTGCCCTCCCATGATGAAGCTAGTAATAAGGAGATTATTGGAAACTTAGAAAGAATTGTACCTCTTCAAATTATGTGTGTTGCAATCCATCAATGGGTTAGAATAGTATACTTGTCAAAGCAGCTGTCTTGA 1614 0.4182 MAIITTTKRTEGFRRTTPPTCKYWQAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKMASSSAKKAIKKPENCALRAVEYRPEAMSVEKPTKCEQKAVADVEDVATVAKCEQKNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVHMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLSGHSKPVVSLAIGCHKMLYSGSMDHTIKVWDLDTLQCTMTLNGHTDVVTSLICWDNFLLSASSDCTVNVWVCTEEGTLEVTYTHTHENAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFGIGPGGLFFTGDGTGLLNVWKWLEEPKDISKMENWTLNWKCTQALSSWLKKCKDENLESLNKLYRFNDDEHNKSNVPIELFEKTPNLETMEVSYYYDETLKNILPSHDEASNKEIIGNLERIVPLQIMCVAIHQWVRIVYLSKQLS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00606 537 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Adu02g00606 537 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Adu02g00606 537 Gene3D - 249 445 IPR015943 GO:0005515
Adu02g00606 537 Gene3D - 108 248 IPR015943 GO:0005515
Adu02g00606 537 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Adu02g00606 537 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Adu02g00606 537 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Adu02g00606 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
Adu02g00606 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 288 - -
Adu02g00606 537 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 417 - -
Adu02g00606 537 SUPERFAMILY WD40 repeat-like 117 413 IPR036322 GO:0005515
Adu02g00606 537 PANTHER - 14 417 IPR044715 -
Adu02g00606 537 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Adu02g00606 537 SMART WD40_4 375 412 IPR001680 GO:0005515
Adu02g00606 537 SMART WD40_4 288 325 IPR001680 GO:0005515
Adu02g00606 537 SMART WD40_4 331 372 IPR001680 GO:0005515
Adu02g00606 537 SMART WD40_4 247 285 IPR001680 GO:0005515
Adu02g00606 537 SMART WD40_4 125 164 IPR001680 GO:0005515
Adu02g00606 537 SMART WD40_4 204 241 IPR001680 GO:0005515
Adu02g00606 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Adu02g00606 537 Pfam WD domain, G-beta repeat 290 324 IPR001680 GO:0005515
Adu02g00606 537 Pfam WD domain, G-beta repeat 250 285 IPR001680 GO:0005515
Adu02g00606 537 Pfam WD domain, G-beta repeat 128 164 IPR001680 GO:0005515
Adu02g00606 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 324 IPR001680 GO:0005515
Adu02g00606 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00606 Adu-Chr2 8063121 8066348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00606 131 372 Acyl Lipid Metabolism Gene Families AT3G18860 24.806 2.70e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu02g00606 WD40 0.0052 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00606 - - ahf:112726849 674.855