LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g00569	ATGGGAGAAATTTTTGATTCTGTTCTAGATGTCAATGCTAAAACACTTCATTGGAATTTTAAAGTATATGTCATAAGAATCTGGGAGGTTCCTAGCAAGTTTAATAACAATGAAGTTAATAGTATTGAAATGGTGCTTCAAGATAACAAGGGTGGGAGAATCCACGCTTCCATTCCAAGGGCAGTTGCTAATAGAAAATGGAGGGGTGTCATTGAGGCTTTTCAGATGTACATTATGTCAAATTTTGTGGTATTGAAAAACACTACCAAGACCAAGACATACCCTAGCCAGTGGTTACTCATGTTCTCACACAGGACACGTGTTAATCACGTGGAAAATCCTTCTTTCCCACTTGAAGCTTTCCATTTCAAGACCATTCCTGACTTGGTCACTGCACAGAAGATCGATGAGAACGATATTGTTGATCTCATTGCCGAGGTTGTTGGAAAGGCCGATCATAGGGACTTAGTCACCAGCAAGGGAATGGAGACAAAACGTTTGGTTTTAGAACTAAAAGATTTAGAGAACAACCGTATTCACTGCATTTTGTTTGGTGAAATGGTTGACCAAATCTTACCACATCTTCAACATGAGAGGGTAGAGCCACTCATTGTGGTGTTTCAGCTATTTAAGGCTCATAGGTGGAATGGCCAAACATCTATTCAGAGCAACTTCAACGTGTCAAAGCTGCACATTAACCCAGAATTAAAAGAAGTGGTTTTGTTTAGAGACAGGTTGCTAAGTGGTGCATCATCAAACTCTGTGAGGATTAGTCAAATGTCTTCACAAGGTGCTTCCTCCGGTATTGATGAGCTTACCGTAGGATCTGCTATTGTCAAATCAATCGATGAAGTGCTAACAAGTACTGAGGAAGGCACAGTTTGGATTGTTGGAACCATTGTTTCAATAAATGCGGGCAAAGAAGATTGGTTTTACAAGTCATGTCGCAAGTGTCCAAAGAAGGTTGAAACTCCAATTGGTAATAGATATGAATGTACTAAATGTGGTCACACACATGGGTGTGCAGCCTTGAGGTACAAGGTGGAGATTATGGTTCATGATGGAACAGGGAGTATCAACTTGCTGTTGTGGGACAGAGAAACCTTTCAACTATGTGGAAAACAAGCGGAAAAAGTTAAGGAGGAAGAGGTCACAAGTGGAGATAAATATCCAGCCACACTTGACAATATGATGGATAAGAGGGTTTTTTTTAAGATTAATGTGAAAGCTGCAAATATCAACCACTATGATCAACTCTTTACTATTATGAAGATCTGTGATGATTATGAAATTATTGAGAAGAACATCCCAGTAATTGACACAACCAACCCCGCTAACAATGTTGAGGACAATGGATGCAGCAACTCGCTGGATTTTTCGGAGAATGTTGTTAATCTCAACACTGATAATGATACTCAGCGTACAATGGATGGTATGGAAGAGTGTATATCCAACCTCAAGTACAAAACTCCAGCTAAGAGAGCTTGCAGCGAAATGAAGCCAGCCTCTAATGGGCTTAACCACATTGAGAAAGAAGGACAATTGTCAACAAATAAGTTCAGCAGAAAAGATTCCAAGAAGCAAAAGTCACTAATGAATGAAGTGGATAACTGA	1614	0.3971	MGEIFDSVLDVNAKTLHWNFKVYVIRIWEVPSKFNNNEVNSIEMVLQDNKGGRIHASIPRAVANRKWRGVIEAFQMYIMSNFVVLKNTTKTKTYPSQWLLMFSHRTRVNHVENPSFPLEAFHFKTIPDLVTAQKIDENDIVDLIAEVVGKADHRDLVTSKGMETKRLVLELKDLENNRIHCILFGEMVDQILPHLQHERVEPLIVVFQLFKAHRWNGQTSIQSNFNVSKLHINPELKEVVLFRDRLLSGASSNSVRISQMSSQGASSGIDELTVGSAIVKSIDEVLTSTEEGTVWIVGTIVSINAGKEDWFYKSCRKCPKKVETPIGNRYECTKCGHTHGCAALRYKVEIMVHDGTGSINLLLWDRETFQLCGKQAEKVKEEEVTSGDKYPATLDNMMDKRVFFKINVKAANINHYDQLFTIMKICDDYEIIEKNIPVIDTTNPANNVEDNGCSNSLDFSENVVNLNTDNDTQRTMDGMEECISNLKYKTPAKRACSEMKPASNGLNHIEKEGQLSTNKFSRKDSKKQKSLMNEVDN	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g00569	537	Pfam	Domain of unknown function DUF223	43	115	IPR003871	-
	Adu02g00569	537	Gene3D	-	257	434	IPR012340	-
	Adu02g00569	537	CDD	RPA1_DBD_A_like	21	108	-	-
	Adu02g00569	537	PANTHER	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE	18	474	-	-
	Adu02g00569	537	Gene3D	-	115	256	IPR012340	-
	Adu02g00569	537	SUPERFAMILY	Nucleic acid-binding proteins	282	426	IPR012340	-
	Adu02g00569	537	MobiDBLite	consensus disorder prediction	515	537	-	-
	Adu02g00569	537	CDD	RPA1_DBD_B_like	157	246	-	-
	Adu02g00569	537	PANTHER	REPLICATION FACTOR A 1, RFA1	18	474	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Adu02g00569	537	SUPERFAMILY	Nucleic acid-binding proteins	121	246	IPR012340	-
	Adu02g00569	537	Gene3D	-	6	110	IPR012340	-
	Adu02g00569	537	MobiDBLite	consensus disorder prediction	502	537	-	-
	Adu02g00569	537	SUPERFAMILY	Nucleic acid-binding proteins	8	115	IPR012340	-
	Adu02g00569	537	Pfam	Replication factor-A C terminal domain	298	417	IPR013955	-
	Adu02g00569	537	CDD	RPA1_DBD_C	279	425	IPR013955	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g00569	Adu-Chr2	7496531	7499632	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g00569	8	379	Core DNA Replication Machinery Family	AT2G06510	22.222	1.74e-13	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g00569	-		-	adu:107477039	650.588