Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00523 ATGGCTACTCCCGATGAGAAAGAGAAGATGAGTTTGGGTTTGAGTCTCAGCTTAGGATTATTTGGAGATAATAATAATAATAATAACAATAATAATAAGAACAAAGAGCAAGAAGCTTTGAAGCTCAATCTCATCCAGAAGCCTCTACCTCAATCATTTCCAAACCATAGGCTTTCCTTCAACAACTTGTTTCCTTTTCATGATCTGAGCTCCGACACGAGGTTGTTCCTTCGCGGAATAGACGTTAATTCGGCGCCGACGTTTACCGCGGCGACGGCGGCGACGGCGGCATGTGAAGACGAGAACGGCGTCTCGTCGCCGAACAGCACGGTGTCGAGCATCAGCGGTAAGCGGAGCGAGAGGGAACCCAACGGAAACGACGAGAACGAAGCCGCAGAGAGAGCCTCGTATTCTCGAGGGAGCGACGAAGAAGACGGCGGCGGAATCGGCGGCGATGCCGACGGGGATAGTTCGAGAAAGAAGCTGCGGTTGTCCAAGGAGCAGGCGGTGGTTCTGGAAGAGACCTTCAAGGAGTACAACACTCTCAACCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAGGCCTAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAATTGAAGCAAACTGAAGTTGATTGTGAATACTTGAAAAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCACCACAACTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGTGTAGCCGTCTCGTCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCCGCCCCTGCCTCAGCTAGTCAAAACCAAATGGGCCCTAACGTTCAGCGGCCGGTTCCTGTCAATCCATGGGGAGCAATGTCACTTCAACGCCGGCCGATCGAGACCCCGACTACCCGGCCATAA 990 0.5091 MATPDEKEKMSLGLSLSLGLFGDNNNNNNNNNKNKEQEALKLNLIQKPLPQSFPNHRLSFNNLFPFHDLSSDTRLFLRGIDVNSAPTFTAATAATAACEDENGVSSPNSTVSSISGKRSEREPNGNDENEAAERASYSRGSDEEDGGGIGGDADGDSSRKKLRLSKEQAVVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNQMGPNVQRPVPVNPWGAMSLQRRPIETPTTRP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00523 329 MobiDBLite consensus disorder prediction 275 329 - -
Adu02g00523 329 MobiDBLite consensus disorder prediction 99 119 - -
Adu02g00523 329 MobiDBLite consensus disorder prediction 120 141 - -
Adu02g00523 329 SMART HOX_1 157 219 IPR001356 GO:0003677
Adu02g00523 329 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981|GO:0006355
Adu02g00523 329 MobiDBLite consensus disorder prediction 275 304 - -
Adu02g00523 329 Pfam HD-ZIP protein N terminus 8 122 IPR006712 GO:0005634
Adu02g00523 329 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677
Adu02g00523 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 10 318 - -
Adu02g00523 329 Pfam Homeobox associated leucine zipper 215 249 IPR003106 GO:0006355|GO:0043565
Adu02g00523 329 PANTHER - 10 318 - -
Adu02g00523 329 MobiDBLite consensus disorder prediction 98 161 - -
Adu02g00523 329 Coils Coil 221 251 - -
Adu02g00523 329 CDD homeodomain 159 216 IPR001356 GO:0003677
Adu02g00523 329 Pfam Homeodomain 159 213 IPR001356 GO:0003677
Adu02g00523 329 SMART halz 215 258 IPR003106 GO:0006355|GO:0043565
Adu02g00523 329 Gene3D - 163 213 - -
Adu02g00523 329 SUPERFAMILY Homeodomain-like 145 216 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00523 Adu-Chr2 6685436 6688907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00523 50 321 Homeobox Transcription Factor Family AT3G60390 63.380 6.19e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu02g00523 HD-ZIP_N 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00523 K09338 - gmx:100798480 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g00523 02 6685436 6688907 Adu02g00523 02 6685436 6688907 ECH
Adu02g00523 02 6685436 6688907 Adu04g02734 04 115079536 115082015 PCT