Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00415 ATGTCGGAAGGTGCTGAAATCGATGAGCGTGTGGACTTTGATGATGAGAATTACATGGAAGAGATGGATGATGATGATGTCGAGGAACAATCAGATGGCGATGATGAGGATGATGATGATGATGGGGATGGCGATGATAATAATAACGATAATGCGAACGATAATGATGACGATGACGACGATGATGACGATGATGGAGTGGATGGACAAGGTGAGGAAAATGCTGAAGAACAGGAATATGAAGACTCGGGGGAGGAGGCTGGTGGGAAAGACCAAATGGCCAAAGGGGATAGAACTGGCATTACCACTGGGTCCGAAGGAGATGGGCTGAAACCACCCTTCATCGACGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCAATGCCTCCTCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGTTTGCGAGGATGATTTGAGGGAATTGTGCGAATCGTTGGGTGAAATTTTTGAGGTGCGATTGATGAAAGACAGGGACAGTGGAGAAGGTAAGGGGTATGCTTTTGTGGCTTTCAAAACAAAAGAGGTTGCACAAAATGCCATAGAAGAGATACACAATAAGAAATATAAGGGTAAAACTTTGAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTCATTGGTAATGTTCCGAAAACTTGGACTGAGGAGGAGTTTAGGAGAGTAGTCGAGGGTGTTGGTCCTGGAGTTGAAGTCATTGAGCTCTTTAAGGACGTTCAAAATCCTAGCAGGAACCGTGGGTTTGCGTTCGTGTCGTATTACAATAATGCATGCGCAGATTATTCAAGGCAGAAAATGTCAACTGCAGGTTTTAAGCTGGAAGGTAATACCCCAACTGTCACATGGGCGGATCCAAAGAATTCAACTGATCATTCAGCTGCTTCCCAGGTTAAAGCTCTTTATGTGAAGAACATACCTGAAAATACTACTACCGAACAACTCAAGGAACTGTTTTCTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTAGCAAGGCCGGAGGGAAGCGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTAAAGGCCGTAAAAGACTCAGAGAAATACGAAGTTGATGGCCAATTGCTCGAGGTTGTTCTTGCCAAACCTCAAGCTGAGAAAAAACCCGATATGGGTTACGGCTATAATCCTGGACTTGCACATCCTGGGTTTGGTGGTGCCTTTGCTGGAAATCCGTATGGCTCGGCAATAGGTGCTGCAGGAGCTGGATATGGTGTTGCTCCTAGCTTTCAACAGCCGCAGCAACCAGTGATATATGGTAGGGGTCCAATGCCGGCTGGAATGCAGATGGTTCCGATGGTATTGCCAGATGGTAGAATCGGCTATGTCTTTCAACAGCCTGGTGTACAGATGCCAGCACCTCGTCCACGCGGGCCTGGTAGGGGCAACAGTTCAGGGGGTCCTGCAGGAAGAGGGGGAGGCAGCGGCAATGAGGGCAGCGCAGTAGAAAATGTTGATTATTTAGTTTTGACTTTTGAGAAACTTCATGGATTTGTTGCTTTTGAGAAACTTCATGACCCTTTTAATTATTTAAGGCTATCAGAGTTTGTTAGGCCCGTCTCTTCAAAGCTCAAACTCTAA 1650 0.4552 MSEGAEIDERVDFDDENYMEEMDDDDVEEQSDGDDEDDDDDGDGDDNNNDNANDNDDDDDDDDDDGVDGQGEENAEEQEYEDSGEEAGGKDQMAKGDRTGITTGSEGDGLKPPFIDEEEKQKHDELLAMPPHGSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGVGPGVEVIELFKDVQNPSRNRGFAFVSYYNNACADYSRQKMSTAGFKLEGNTPTVTWADPKNSTDHSAASQVKALYVKNIPENTTTEQLKELFSRHGEVTKVVMPPSKAGGKRDFGFIHYAERSSALKAVKDSEKYEVDGQLLEVVLAKPQAEKKPDMGYGYNPGLAHPGFGGAFAGNPYGSAIGAAGAGYGVAPSFQQPQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVFQQPGVQMPAPRPRGPGRGNSSGGPAGRGGGSGNEGSAVENVDYLVLTFEKLHGFVAFEKLHDPFNYLRLSEFVRPVSSKLKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00415 549 SUPERFAMILY RNA-binding domain, RBD 131 299 IPR035979 GO:0003676
Adu02g00415 549 PANTHER GEO13361P1-RELATED 46 502 - -
Adu02g00415 549 CDD RRM3_hnRNPR_like 308 386 - -
Adu02g00415 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Adu02g00415 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Adu02g00415 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 206 IPR000504 GO:0003723
Adu02g00415 549 SMART rrm1_1 135 208 IPR000504 GO:0003723
Adu02g00415 549 SMART rrm1_1 310 382 IPR000504 GO:0003723
Adu02g00415 549 SMART rrm1_1 215 292 IPR000504 GO:0003723
Adu02g00415 549 MobiDBLite consensus disorder prediction 1 114 - -
Adu02g00415 549 SMART rrm2_1 135 208 IPR003954 GO:0003676
Adu02g00415 549 SMART rrm2_1 310 382 IPR003954 GO:0003676
Adu02g00415 549 Gene3D - 115 214 IPR012677 -
Adu02g00415 549 Gene3D - 296 414 IPR012677 -
Adu02g00415 549 MobiDBLite consensus disorder prediction 471 501 - -
Adu02g00415 549 Gene3D - 215 295 IPR012677 -
Adu02g00415 549 MobiDBLite consensus disorder prediction 8 84 - -
Adu02g00415 549 CDD RRM_SF 136 208 - -
Adu02g00415 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Adu02g00415 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Adu02g00415 549 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 46 502 - -
Adu02g00415 549 SUPERFAMILY RNA-binding domain, RBD 305 405 IPR035979 GO:0003676
Adu02g00415 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 296 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00415 Adu-Chr2 4862734 4866254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00415 136 443 Eukaryotic Initiation Factors Gene Family AT1G71770 25.714 2.39e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00415 K13161 - gmx:100800974 644.039