Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00398 ATGGAATATGCAACATATTCATCAGCAGCAGAAGTTTGTGAAGGTATTGAAACTCCACCAGCACCAGCAGCATCATCTTCATCAATTTCATCCATGATGATTTGTAGGAAGAAGAAGAACAACAACAGCAACAATACAAGGAGGTTCAGTGATGATCAAATCAAGTCATTGGAATCAATATTTGAGACTGAGTCAAGGCTTGAGCCAAAGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTGCAGCCAAGACAAGTTGCTATTTGGTTTCAGAACAAGAGAGCAAGGTGGAAGTCAAAGCAACTTGAGAGAGATTACACCATTCTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAACAAGCATTACTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCATCAATGGAGAAGAAAACTCAGAGCATGGACAGTGAATCAGAAAATGGTGACACAACCAAGAGTGGTAGTGAACTTAAGGTCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCTTTGTGGTGGTGGTGGTGGTGGTGCTCTTTCAGATGATGATACAAGCATCAAAGTTGAGTACTTTGGAAACTTGGAAGATGGGCTTGTGAATTTTGCTCATGATCATGGTGATGGGTCTTTGACATCACCAGAAGATTGGGGTCATTTTGATTCTGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTTTGGTCCTGA 777 0.408 MEYATYSSAAEVCEGIETPPAPAASSSSISSMMICRKKKNNNSNNTRRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILRNNYNNLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKTQSMDSESENGDTTKSGSELKVKPISQSSMAARSSEHAVLCGGGGGGALSDDDTSIKVEYFGNLEDGLVNFAHDHGDGSLTSPEDWGHFDSDDLLGQSTSDYQWWDFWS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00398 258 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Adu02g00398 258 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Adu02g00398 258 Gene3D - 26 105 - -
Adu02g00398 258 Pfam Homeodomain 47 98 IPR001356 GO:0003677
Adu02g00398 258 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 258 IPR045224 GO:0003700
Adu02g00398 258 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Adu02g00398 258 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Adu02g00398 258 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Adu02g00398 258 MobiDBLite consensus disorder prediction 143 169 - -
Adu02g00398 258 SMART HOX_1 43 104 IPR001356 GO:0003677
Adu02g00398 258 Coils Coil 92 140 - -
Adu02g00398 258 SUPERFAMILY Homeodomain-like 22 102 IPR009057 -
Adu02g00398 258 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 29 258 - -
Adu02g00398 258 CDD homeodomain 47 101 IPR001356 GO:0003677
Adu02g00398 258 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00398 Adu-Chr2 4497257 4499142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00398 12 258 Homeobox Transcription Factor Family AT2G46680 49.438 1.06e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu02g00398 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00398 K09338 - gmx:100811208 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g00398 02 4497257 4499142 Adu02g00398 02 4497257 4499142 ECH