Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00387 ATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGCTATGAAAAGCAAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCGACAAAAACCCTATTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCAGGATATAGAAAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTAGGAACTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCTACGAAAGCTCTTGAGTGTACGAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGATAGGGGTGACAAGTATGACAGTCCGAGACGGGGTGGTTATGACCGATCACCGAGTCCGGCCTATCGCAGGCGGCCAAGTCCTGACTACGGTCATCCACACAGCCCTGTGTATGATAGATATAATGGACCAGATAGGCGTAGGAGTCCCGATTACGGCAGGCAGAGGAGCCCAGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGATACCGCAGGTATAATAATGGCAGGCACAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGGCACAGGAGTCCTGATTATGGATTTGGTTTGGCTTTGCAAATAGCTTTGTTGGTTGAAGGATTTTTTCGAGCTGTGATGAACCCAAACCAATTGTCCGAAGGAAGCTCAACATCCAGGAGTATGAACAAGAGAAGACATCGATGCTTCTGTGGGAAGGAGATGGTGGTGCTCTCGTCGTCGTCGTTTATGAACAGCCCAAGTAGGAGATTTGTTGCTTGTTGTAAATTACCAAAGTGTAATTTTTTTGAGTGGATTGATAGATATAAAGAGGTGATGGGAAAGGGGAGAAGGTCTCACTGCTTTTGTGGAGATCTGCTGACACTTCGAATCTCCAGTACTGTGATGAACCCAAACAGAAGATTTATATCCTGTCCCAGTAGAAGATGCAAGTTTTTTGAATGGATTGATGAAGAAGACATGGCTGGGGCTCAATCTCAATGCACCTAA 1152 0.4592 MKSGFAFVYYEDERDAEEAIRALDNFPFGYEKQRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVQDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGDRGDKYDSPRRGGYDRSPSPAYRRRPSPDYGHPHSPVYDRYNGPDRRRSPDYGRQRSPDYGRHRSPDYGRHRSPDYGRYRRYNNGRHRSPDYGRHRSPDYGRHRSPDYGFGLALQIALLVEGFFRAVMNPNQLSEGSSTSRSMNKRRHRCFCGKEMVVLSSSSFMNSPSRRFVACCKLPKCNFFEWIDRYKEVMGKGRRSHCFCGDLLTLRISSTVMNPNRRFISCPSRRCKFFEWIDEEDMAGAQSQCT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00387 383 Pfam GRF zinc finger 334 372 IPR010666 GO:0008270
Adu02g00387 383 CDD RRM2_AtRSp31_like 60 129 - -
Adu02g00387 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 42 IPR000504 GO:0003723
Adu02g00387 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 130 IPR000504 GO:0003723
Adu02g00387 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 29 IPR000504 GO:0003723
Adu02g00387 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Adu02g00387 383 SUPERFAMILY RNA-binding domain, RBD 3 132 IPR035979 GO:0003676
Adu02g00387 383 MobiDBLite consensus disorder prediction 172 233 - -
Adu02g00387 383 SMART rrm1_1 60 126 IPR000504 GO:0003723
Adu02g00387 383 Gene3D - 1 53 IPR012677 -
Adu02g00387 383 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 169 - -
Adu02g00387 383 Gene3D - 54 138 IPR012677 -
Adu02g00387 383 MobiDBLite consensus disorder prediction 132 233 - -
Adu02g00387 383 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 3 169 IPR029537 GO:0000398|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00387 Adu-Chr2 4259696 4263020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00387 4 132 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 1.43e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00387 K12893 - gmx:100797709 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu02g00387 02 4259696 4263020 Adu02g00387 02 4259696 4263020 ECH