LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu02g00176	ATGGACCAGCTTCCCCAACCCGAGCGCCACCGCGGACGGCCCCACCCCGCCGGAACCATAAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCAGCTGAGATAAGGGACCCTCAAACTAAGGAGCGGCGTTGGCTGGGGACATATGACACTGCGGAGGAAGCCGCCCGCGCCTACGACTCCGCCGCCAGAGTCTTGCGTGGTCCCAATGCGAGAACCAACTTTGTGTATTATATTTCCCCTCCTCAACCTTCTTTTATCTTCGTCACCAACAAAAACAACAATAAAAACATCCTTAACCGCAGTAGCCACTTCTTGGGAAGTCAGTTCAGCTTCCCCATCCATCCTAACCAACTCTTCAACAGTCGTAACTGCCACTTGGGTGGTTCTTGGCCTGACCCCTTCTCCTCCTACTCCACCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCATCTTAACTCCACAAACATGCTTCTCCCCCATGACTTCGCAGCCCCTTCTGCTTCATCTTCCTTTGGCAAGGGCAGTTTGGTCAACTCATCACATGGTGGCCATGCTAATCCTTCTCCTTCATCTTCATTTAGTCCCCATTTATCCTACCCCAAGCGAAGTTTCAACTCACTTTCATCTTCATTTACCCACCGTTTATCCAACTCATCCCATGGTCGCAATGCTAATCCGCCTTTATCATACCCCAAGGGCAATTTAGTCAACTCATCACATGGTGGTAATGCCAAGCCTTCTGTTTCATCTTCCGTTAGCCACCATTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATAGTGGCAATGCTAATAATCCTTCTCTTTCATCTTCCTTATCGTACTTCAAGGGCAGTTTAGTCAATGCTAATAACCACTCTGTTTCTTCCTCTTGCCTGACAAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATCATAAAGCTGATGGCAGTGAATACTCGCAAGAGTTCTTTCATCACTCAGACTCGTCATCGGAGTTGTTGGAAGACATAGTTAGCGGTTTTTTGAAAAGTCCAAAGCCCACTAAAAGTGAGTGTCAGTTGTTAGGTGCTCCTACTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGAGGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCGCATGCAGCAACTTGGTGCTTTTAATTTCAATGGCTCTAGCAATACGGCAGTTCCCTCTGGCATGCCTCTTACTCAGGAGAAGAAGAGAAACAACAACAACAACAACAACAACAACAATAATAATAATAATCATCTTGAAGAAGAGTGGCCTATGATGGAAGACATTTTTGATCAGTACTCGGACTTTCTTAATGACTTTCTTAATTAG	1437	0.4662	MDQLPQPERHRGRPHPAGTIRYRGVRRRPWGRYAAEIRDPQTKERRWLGTYDTAEEAARAYDSAARVLRGPNARTNFVYYISPPQPSFIFVTNKNNNKNILNRSSHFLGSQFSFPIHPNQLFNSRNCHLGGSWPDPFSSYSTPSSFSTFQQQRNQHLNSTNMLLPHDFAAPSASSSFGKGSLVNSSHGGHANPSPSSSFSPHLSYPKRSFNSLSSSFTHRLSNSSHGRNANPPLSYPKGNLVNSSHGGNAKPSVSSSVSHHLSYPKGSLVNSSHSGNANNPSLSSSLSYFKGSLVNANNHSVSSSCLTNTNSLGCGSDNNHKADGSEYSQEFFHHSDSSSELLEDIVSGFLKSPKPTKSECQLLGAPTSPSQDSSHLKAESFPPLSAVSTGQMTKKDEDFNVPLYQDGFRMQQLGAFNFNGSSNTAVPSGMPLTQEKKRNNNNNNNNNNNNNNHLEEEWPMMEDIFDQYSDFLNDFLN	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu02g00176	478	SMART	rav1_2	21	84	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	Gene3D	AP2/ERF domain	20	79	IPR036955	GO:0003700\|GO:0006355
	Adu02g00176	478	Pfam	AP2 domain	21	70	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE	14	476	-	-
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	1	15	-	-
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	179	202	-	-
	Adu02g00176	478	Coils	Coil	438	458	-	-
	Adu02g00176	478	SUPERFAMILY	DNA-binding domain	21	79	IPR016177	GO:0003677
	Adu02g00176	478	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	357	380	-	-
	Adu02g00176	478	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	14	476	-	-
	Adu02g00176	478	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	362	380	-	-
	Adu02g00176	478	CDD	AP2	21	77	IPR001471	GO:0003700\|GO:0006355
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	1	21	-	-
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	420	454	-	-
	Adu02g00176	478	MobiDBLite	consensus disorder prediction	216	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu02g00176	Adu-Chr2	2113944	2115457	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu02g00176	19	115	AP2-EREBP Transcription Factor Family	AT1G24590	55.963	4.76e-31	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Adu02g00176		AP2	4.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu02g00176	-		-	aip:110267408	701.049