Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03340 ATGAAGGGTGTTCTAATTTCCATCAACTTTATCTTTTGTTGCTTCTTACTGTTTTTGGATTCATCAACTTCACTTCCTTTATGCGTTGACTCAAGTGCACCTTTCATCCTCAATAGCACACTTGAATTTTGTCCTTACAATGGAAGCACTTGCTGCAACTCCACAGAAGATGCACAAATTCAGAAACAATTCCAGCTTATGAACATCTCTGATACTACCTGTGCCTCAGCTCTGAAATCGATACTTTGTGCGAGGTGTGATCCGTATTCGGCCGAGCTGTTTACAGTTCAATCGACGCCCCGGTCAGTTCCCTTGCTCTGCAATTCCACCATTGCATCCAATTCCTCCCAGTCAAAGGCAGTAGCAGTGGAAGACTTCTGCTCTCAAGTCTGGGAATCATGTCAATCTGTGTCAATAAAGAACTCGCCATTTTCGCCTTCATTACAAGGCCAAGCAGGGAGAACACCATCTAAAAGCAATCCAAGCAAACTCACAGATCAATGGCAGTCGAAAACAGATTTTTGTACTGCATTTGGTGGATCCTCCACTAGTGAATCTGTATGCTTTGAAGGAGAACCTGTTGCATTAAAGAACACTGACTCAGAAGCTCCTATTAATCCTCCACATGGCTTGTGCCTGGAAAAAATTGGCAATGGATCCTATCTCAACATGGTTGCTCATCCAGATGGCACGAACCGTGCATTCTTCTCGAATCAGAAGGGACAAGTTTGGTTAGCAACTATTCCCATTCCATCCGAAATTCGCAGAAAATGGCCGATAGGCACAGGTAGTAGTGGTGTACAACCCTGCCAATACCAAGCTGTTGTTGCTGAATATACTGCTAATGGTACCGCGTCTCAGCCTTCATCGGCTGTAAGTGCTAAACCAACAGAGGTGAGAAGGATATTTACCATGGGGTTGCCTTCTAATACTGAGAATGGAGGTCAGATTCTCTTTGGACCTGATGATGGGTACTTGTACTTCATGATGGGAGATGGTTCAGGCACTGGTGATCCATACAACTTTGCTCAAAACAAGAAATCATTGCTTGGAAAGATTATGAGGCTTGATATAGACAACATCCCAAGTGCAGCAGAAATTAGCAAACAAGGTCTTTGGGGTAGCTATTCCATTCCTAAGGACAATCCATTCAGCCAAGACAATGGTTCACAGGCTGAAATATGGGCCTTGGGATTAAAAACTCCATGGCGATGCAGTTTTGATTCAGAAAGACCTTCCTACTTTTTCTGTGGAGATGCTGGACAGGATCTTTATGAGGAAGTGGATCTCATCACAAAAGGTGGAAACTATGGCTGGCGTGTTTATGAGGGTCCCTATCCATTCACCCCTAACGAATCACCTGGAGGAAATACCTCCAAAGACTCCATAAATCCAATTATGCCAATACTTGGATACAACCATTCGGAGGTTAACAAGAATGAAGGGTCAGCATGCATCATTGGGGGTTATATGTATCGATCTAACACTGATCCTTGCATGTATGGAAGGTACCTGTATGCTGATCTATATTCAGTTGCAGTGTGGGAAGCAACAGAAGATCCTGTAAACAGTGGAAACTTCAGCAAAAGCAGAATCCCCTTCAGCTGTTCACATGATTCTCCTATCAAATGTGATCCTGAGCCTGGAACCTCCCTCCCAGCGATAGGCTACATCTACTCATTTGGAGAGGACAACAACAAAGACGTGTATATCCTTACAAGCAAAGGCGTCTACAGAGTTGTTCGTCCGAGTCGCTGCAGCTACACTTGCTCTCAGGAAAAGGCAACAACAGAGGCTCCTTCTCCTTCTACTTCTCCATCTCATGCATGCCAAGTGATTTCTCCCTTTGAAAATCAAATAAGAACGGATCTCCCCCTCCTCCGGCAACCGTCCAACGCCGATCCTCGTCGTCGCCGGAACAGCAACCGCCCCTCTCGCGCGTGCGTCCTCCGCGCCGCTTCTCGCCTCTCAGGTCTCTTCGCCGCGGAGCCTTCACCGTCGATCCATCGGCGGAAGCCGAAGTCCGGGAAGAAAGAGCGCCGGCGGGCGGAGGAGGAGGAGGAGGAAGAAGAAGATGAGGAGTCGCCGCCGCTGTCGCCACAGCAGCAGCAATGCGCGAAGATCGTGACGCAGCTCGTGGAACCGCCGCTGTCGCCTTCGAGGATGCCGCGGTGGAACCTCCGGTGCATGTGGGAGTTGGCTTCGGTGCTCAATTTTTTGCATCTGTTTAGGCCACTTTTGAATATCTCACTTGAATTTTCTGCTGAAGAGTTCGAGACTGCACTTCTTACTCCCAATGACACTTTGAGTGATATACATATGCCTTTGCTTAAGGCAATCCCTCCTATTATACGCATGGCACTCACACGTGATACTTGGATAACTGTATTATGCAGAAAATTGAGAGATTGGTGGCATTGGGTTGCTGATGGGGATCTTCCAATTGTTGCGTCACATGGGACGGAAATTGAAGTATATAAATCGCTTGATCCAGGGGTTCGTCTTGTGATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCCGGAATTATATTGACAACTCCCTCAAACATGGTGTTAAACTTTCAACATTTCGTAAAGAGCGAATTGGAGGTGATTCACATGGAATTTCTTATTGGTATGAAGATGACCCAGTTGTTGGTCACAGGCTGTATCGAGAAACAAGAAAAACTGAAGTGATTCAAATGAAGAAAGGGAAACCAAGAGGTTCACTGGTTCTTTCTAATACATCATACCAGTGGGAATCTGTAGCTACCAATTTTGATGAATTTCAAGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGGACAGAGATCTCTGTGGGGAAAAAGCTAAAGATAGACATGCTTCCTGAAATTGAGAAAGTCCATAAGAGAAAGGAAAAGTTGCTGAAAAAGCAACAGAGAGAGGCCCTTCTTCTTGATAATTACATGATTGCTGATGGTCTTGCTACCGGACGTTCACTGCGTTATAGGAAGCCTGTTACCTACACTTTCGATGATTATGATAAGTCCATAAATGAGGCAATCAAAGAAACCAAACGGAAACAACCATCCCCAGAATCCATGCCCAAGAGAGAGTTGGTAGCAAAACCGGAAGCTTTTAGTAATGGTAAATGGAGTGGTCCTTCACATTCCCCTCAAAATCTGAATTTTGGTTGGTCATCTCCAAAATCACCTTACTCTGATGATGATGAGGAAGACCATATAACGGATCCACTTGATCGAACAAATCGTCGAAGACAGAGACCGAAGCGGTATTCAGATAAAGAGTTCCTTGATCCTGTATCAGATAATGATGCTGACTTTGACAGCGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAGTATCTCAAGAAGCGTAAGCAGAGAAGGAAGCATTCTAGTAGCTCCGAAGGAGATGAAGAATATCAGTGGGATGAAGATAATGTCGAAGAGGAAGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGATGATGATGACGATGAAGATTCCTTGAGTATCAGTGAGGACAGTGACAAACCCCGCAAGTTCAAGGCATTGCGAGGCCGTACTACGAGGGATTCTAAACGCAGGCCTGTCAATGATTTTCAATCAGGTCTAAGGCGCAGTAAGAGGTCAACCCGAAACCGTGTAAATTACCGACAATACGAGGCGTCTGAATCAGAACAAGAGTTTATTAAACCTGAAAAGTCTAATACATCAGCTGATCACTCAGATCCCAGTGAGAATGGGGAATATATGATGGAAAGTGAAGATTCCGACCGGAATGATGATGAAGACCAGGAAATGAAAGTAGAAGAGCAGCCTGCTACTTACCCCATAGTTGAAGAGAATGAACAAAATGCACCTCCCGAAAAGTCAAGTAGTCCTGGTCAGGAGGAAGTTGAGAGCATCGGAAAGCACCATTTCCTTGATTTGAACGAGCTCGCCCCTAGCTCGGGTTTCGATGATGGTCCAAATACAATAATGAAAGATGAAGACAATGAATGA 4032 0.4482 MKGVLISINFIFCCFLLFLDSSTSLPLCVDSSAPFILNSTLEFCPYNGSTCCNSTEDAQIQKQFQLMNISDTTCASALKSILCARCDPYSAELFTVQSTPRSVPLLCNSTIASNSSQSKAVAVEDFCSQVWESCQSVSIKNSPFSPSLQGQAGRTPSKSNPSKLTDQWQSKTDFCTAFGGSSTSESVCFEGEPVALKNTDSEAPINPPHGLCLEKIGNGSYLNMVAHPDGTNRAFFSNQKGQVWLATIPIPSEIRRKWPIGTGSSGVQPCQYQAVVAEYTANGTASQPSSAVSAKPTEVRRIFTMGLPSNTENGGQILFGPDDGYLYFMMGDGSGTGDPYNFAQNKKSLLGKIMRLDIDNIPSAAEISKQGLWGSYSIPKDNPFSQDNGSQAEIWALGLKTPWRCSFDSERPSYFFCGDAGQDLYEEVDLITKGGNYGWRVYEGPYPFTPNESPGGNTSKDSINPIMPILGYNHSEVNKNEGSACIIGGYMYRSNTDPCMYGRYLYADLYSVAVWEATEDPVNSGNFSKSRIPFSCSHDSPIKCDPEPGTSLPAIGYIYSFGEDNNKDVYILTSKGVYRVVRPSRCSYTCSQEKATTEAPSPSTSPSHACQVISPFENQIRTDLPLLRQPSNADPRRRRNSNRPSRACVLRAASRLSGLFAAEPSPSIHRRKPKSGKKERRRAEEEEEEEEDEESPPLSPQQQQCAKIVTQLVEPPLSPSRMPRWNLRCMWELASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLSDIHMPLLKAIPPIIRMALTRDTWITVLCRKLRDWWHWVADGDLPIVASHGTEIEVYKSLDPGVRLVILKALCDIRVEQEDIRNYIDNSLKHGVKLSTFRKERIGGDSHGISYWYEDDPVVGHRLYRETRKTEVIQMKKGKPRGSLVLSNTSYQWESVATNFDEFQDVSEKLFSSKNRTEISVGKKLKIDMLPEIEKVHKRKEKLLKKQQREALLLDNYMIADGLATGRSLRYRKPVTYTFDDYDKSINEAIKETKRKQPSPESMPKRELVAKPEAFSNGKWSGPSHSPQNLNFGWSSPKSPYSDDDEEDHITDPLDRTNRRRQRPKRYSDKEFLDPVSDNDADFDSDDDIVGEAVYDEEYLKKRKQRRKHSSSSEGDEEYQWDEDNVEEEEEEEEEEEEEDDDDDEDSLSISEDSDKPRKFKALRGRTTRDSKRRPVNDFQSGLRRSKRSTRNRVNYRQYEASESEQEFIKPEKSNTSADHSDPSENGEYMMESEDSDRNDDEDQEMKVEEQPATYPIVEENEQNAPPEKSSSPGQEEVESIGKHHFLDLNELAPSSGFDDGPNTIMKDEDNE 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03340 1343 Coils Coil 1147 1177 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1229 1264 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1050 1069 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1046 1343 - -
Adu01g03340 1343 Gene3D - 198 583 IPR011042 -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1071 1108 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 143 166 - -
Adu01g03340 1343 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 826 856 IPR028942 -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 621 645 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 661 704 - -
Adu01g03340 1343 Pfam Glucose / Sorbosone dehydrogenase 294 466 IPR012938 -
Adu01g03340 1343 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 300 451 IPR011041 -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1148 1181 - -
Adu01g03340 1343 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 619 1342 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1200 1216 - -
Adu01g03340 1343 Pfam DDT domain 735 780 IPR018501 -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1109 1124 - -
Adu01g03340 1343 PANTHER REMODELING AND SPACING FACTOR 1 619 1342 IPR028938 GO:0006355|GO:0031213
Adu01g03340 1343 Coils Coil 961 981 - -
Adu01g03340 1343 MobiDBLite consensus disorder prediction 1125 1147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03340 Adu-Chr1 106597550 106609245 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Adu01g03340 GSDH 4.9e-16 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03340 - - aip:107610968 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03340 01 106597550 106609245 Adu01g03340 01 106597550 106609245 ECH