Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03292 ATGGAGGGAGGTGATGACTTCCACCACCATCACCATCATCACCAACACCACCACCACCGACAGAACTTCCCCTTCCAACTTCTAGAGAAGAAAGAAGATCAAGAAGCAGCGTCGTGCTCAACTTCCTCCCCTTACCCTTCCCTAGCTATCTCATCTGCAGAACCATCCACTTCAAATTCAAACCGATCCAATCCAAACAGCAACACTGCAAACAACAACAATAACAACAGCAACAACAACCAATTAGCCTTACAACAAGAACAGCAAATACAGCCTTCTTTATCCTCTGAACCTTCTGGAAAGAAGCCTCCTCCTAAGCGGACATCCACCAAGGACCGCCATACAAAAGTCGATGGCCGTGGCCGCCGCATCCGAATGCCAGCTCTCTGTGCAGCCAGAGTGTTCCAGCTGACACGAGAGCTCGGCCACAAGTCCGATGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTGATCGCCGCCACCGGAACCGGAACAATCCCCGCAAACTTCACGTCCCTCAACATCTCCCTCCGCAGCAGCGGTTCCTCCATGTCCGTACCATCCCAGCTCCGATCCTCATACTTCAGCCCTAACTTCCCCCTCCAAAACCGCCGAACCTTGTTCCCCGGAATAACCCTCTCGTCCGACACCACCACCGCCAGTAACAACAACAACAGCAACAACAACACCACCACTCTCCTTAACTTCCAACAGCAACAGCAAACCCTAACCGCAAATATTTTCAAGCAAGAACTGAGAGAGAGCCATGGCGCTCCCTCTTCTTCTTCCACGTTGGATTTATCTGAAACAAGCGCGGAAGAAGGTTCGTTAGGGAGAAAGAGAAGGCCGCCATCGGAACACGACCTATCTTCTTCAGCACAGCACCAAATGGGAAGCTACCTGCTGCAATCAAGCGCAGGCGCGATTCAGGCGAGCCACGCAGCTCAGATTCCGGCCAACATATGGATGGTGGCGAATTCCCAAAATGCCCCTCAGGTTATGAGTGGTGACCCTATATGGACGTTTCCAACGCAGGTTAGTAACAGTGGGTTGTACCGTGGAACCGTTTCCAGTGGTTTGCACTTTATGAACTTCCCTACTCCTATGGCTTTGTTGACGAGTCAGCAATTAGGTTCTTCCGGTGGCGGAGGCAGTGTCAACGAAAGCCATTTGAATATGATCGCCGGTCTCGGCAGTTACCGTCCGGTCATCGGAGTTTCAGAATCGTCTCAGGCCAGTGGCTCTCATCAACATCATCGAGATGGAACCGATGATCGACACGATAGTACCAGCCACCACTCTTGA 1317 0.5239 MEGGDDFHHHHHHHQHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISSAEPSTSNSNRSNPNSNTANNNNNNSNNNQLALQQEQQIQPSLSSEPSGKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFSPNFPLQNRRTLFPGITLSSDTTTASNNNNSNNNTTTLLNFQQQQQTLTANIFKQELRESHGAPSSSSTLDLSETSAEEGSLGRKRRPPSEHDLSSSAQHQMGSYLLQSSAGAIQASHAAQIPANIWMVANSQNAPQVMSGDPIWTFPTQVSNSGLYRGTVSSGLHFMNFPTPMALLTSQQLGSSGGGGSVNESHLNMIAGLGSYRPVIGVSESSQASGSHQHHRDGTDDRHDSTSHHS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03292 438 ProSiteProfiles TCP domain profile. 110 164 IPR017887 -
Adu01g03292 438 MobiDBLite consensus disorder prediction 104 123 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 257 275 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 1 124 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 412 438 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 277 292 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 216 235 - -
Adu01g03292 438 Pfam TCP family transcription factor 108 248 IPR017887 -
Adu01g03292 438 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 438 IPR005333 GO:0003700
Adu01g03292 438 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 438 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 22 36 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 418 438 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 257 298 - -
Adu01g03292 438 MobiDBLite consensus disorder prediction 37 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03292 Adu-Chr1 105710656 105712655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03292 95 380 TCP Transcription Factor Family AT3G47620 48.138 8.48e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Adu01g03292 TCP 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03292 - - pvu:PHAVU_003G190900g 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03292 01 105710656 105712655 Adu01g03292 01 105710656 105712655 ECH
Adu05g01767 05 43870540 43872664 Adu01g03292 01 105710656 105712655 PCT