Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03239 ATGCAATGCTGCTACGTTTCTCTTCTCCCCTTCTCCTTGACCCCTTCTCTGCTCTCTAAGCCAGAGCTGGTGCCGCCGGCGTCGCTGCTCCGTTCTCTCTCGATCACTACTCCGCTGAGTCCGTTCAACTCCTGCGCCGCCTCCATTCTCCATTTGAAGCTGCACCTTCCCGAAGCTATACCTCATGACACCCTTTCTCGCCTCTTATCTCATTACGGTGCTTCCTCTCTTCGTCCTTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTCGTAGATTTCAAAAATGAAATCTTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTATTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGACTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGTTTCCCTGTTGCTAAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTATGCTTATCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCCGTGCCAACACCACCACCTCCCCCTCCTCCGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAAGAAGCGTGCCAGGCGTGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATACCATTAATCAAGAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGTAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGATAGTCCAGATCCACATAAATTCTTGACTCCAGAAGAATTAGAGAGTGGAAAATTGCCTCCTGAAGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCAGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTCGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA 1443 0.4414 MQCCYVSLLPFSLTPSLLSKPELVPPASLLRSLSITTPLSPFNSCAASILHLKLHLPEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEILASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKDSKASVVKDTTVTKAIDGDTKSGCFPVAKPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVVLHLMNKMNIPAPFRMALPTPPLPPAVPTPPPPPPPVPLKPQSADLSSGESEMESSEEEVEPTTEKPKKRARRETIIGPAIDKDVAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKDSPDPHKFLTPEELESGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03239 480 MobiDBLite consensus disorder prediction 330 366 - -
Adu01g03239 480 Gene3D - 55 119 IPR012677 -
Adu01g03239 480 MobiDBLite consensus disorder prediction 272 292 - -
Adu01g03239 480 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 55 478 - -
Adu01g03239 480 SMART rrm1_1 49 119 IPR000504 GO:0003723
Adu01g03239 480 SMART rrm1_1 392 469 IPR000504 GO:0003723
Adu01g03239 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 391 473 IPR000504 GO:0003723
Adu01g03239 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 123 IPR000504 GO:0003723
Adu01g03239 480 SUPERFAMILY RNA-binding domain, RBD 56 474 IPR035979 GO:0003676
Adu01g03239 480 Gene3D - 386 479 IPR012677 -
Adu01g03239 480 MobiDBLite consensus disorder prediction 235 253 - -
Adu01g03239 480 MobiDBLite consensus disorder prediction 328 366 - -
Adu01g03239 480 PANTHER UNCHARACTERIZED 55 478 IPR045164 -
Adu01g03239 480 MobiDBLite consensus disorder prediction 235 292 - -
Adu01g03239 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 393 465 IPR000504 GO:0003723
Adu01g03239 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 116 IPR000504 GO:0003723
Adu01g03239 480 CDD RRM2_RBM40_like 392 471 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03239 393 469 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 2.23e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03239 K13157 - gmx:100818499 604.749