Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03223 ATGGAAGAAGAAGATCATCATCATCAAGAACAAGAACTGATGAGGCACGTGTGCAAGTTCTGCAACAAGAGCTTCCCTAGTGGAAGATCCTTAGGGGGTCACATGAGGTCTCACGTGACCAACAACACCCATGAAGCCGAAGAGAAAGAGAAGCTTTCATCATCTGAAGCTGGAACAATCACTAACAACAGCAGTGGCTATGGTTTGAGGGAGAATCCCAAGAAGACATGGAGGATCATTGCGGATTCATCAACTAATAGTGAAGACAACAACAACAACAACAACAATTCTTCTTCTTTTTCTTCTTTGTTGATGTGTGACAAGCTTTGCAAAGAGTGTGGAAAAGGGTTCAGTTCTTGGAAGGCCTTGTTTGGCCACATGAAACGCCATTCCCACTCGTCTTCTGCTTCTGCCTCTGATCAAGATTCTTGTTGGACAACGAAGAAGCTTCTTGTAATGGATTCACAATCTGATAATGAAGCCACTACTGCTGCTCCTCCAAGAAGGAGAACAAGGTCAAAGAGGAAAACAACAAGAAGGTATAACATTGCTTCTGCTTCGACGACTAGTTTCGCTGCGAAAACTTCTTGTTCTGTTTACTCTGAGGCTGAGGTTGAGGTTGAGATTGAGCAGGAGCAAGAGGAGGTTGCTATGAGCTTGATGATGCTTAGTAGAGATGTTGGTAATTGGTGGAGTGCTCGTGATGGTGGTGTTCATTCTCTTGTTGAGTCTTCTTCGGTTGTTAGGACTAGAATTCAGGACAAGAAGATGATGAAGATCAATGCTTGTTCTGAGGTTGGAAGAGTAGGAAGCAGCGCAGAACTTTTGGATTTGGATTTGGAGGATGATGGATTTGAACATGGCAAGAAGTACAGTTCAATCAAGGAGAAGATTTCGGATTGTTCGAATTCGAATTCGGCTAATAAGAGGGGAAAGTTTGAGTGTACTACTTGCAAGAGGATCTTCCATTCTTATCAAGCACTTGGAGGGCATAGAGCAAGTCACAAGAAGATTAAGGGATGCTTTGGTTCAAACAATGATAACAGCATTCAGATTGAGATTGAGATTGAGACTGAACTCTCTCCTAACAACAAAATTGAGAGTTTACAGAATGAAGAACTTGGTTTTGATGATTATGATGATGATGATGATGATGAGGCTGAAGAAGAAGATAACAAGACAGCAAAGAAGGTAAACAAAGTTCATGAGTGTCCAATTTGCCTGAAAGTTTTTGCTTCTGGACAAGCATTGGGTGGACACAAGAGATCTCACACTGCCAAAATTGAGGAACAGGAAGAAGAACAAGTTCAAGAAATTAGGGTTAGGGATTTGCTGGATCTGAATGTTCCAGCAGCAGCGGCTACTACTACTGAAGAGGATGAAACTAACAACAGTTTCAATGTTGATTCTAATAATAACAAGAGACATTGGTGGGAAGAGGCACCACTGCTAGGACTTATCTCTCTTAACTAA 1473 0.4182 MEEEDHHHQEQELMRHVCKFCNKSFPSGRSLGGHMRSHVTNNTHEAEEKEKLSSSEAGTITNNSSGYGLRENPKKTWRIIADSSTNSEDNNNNNNNSSSFSSLLMCDKLCKECGKGFSSWKALFGHMKRHSHSSSASASDQDSCWTTKKLLVMDSQSDNEATTAAPPRRRTRSKRKTTRRYNIASASTTSFAAKTSCSVYSEAEVEVEIEQEQEEVAMSLMMLSRDVGNWWSARDGGVHSLVESSSVVRTRIQDKKMMKINACSEVGRVGSSAELLDLDLEDDGFEHGKKYSSIKEKISDCSNSNSANKRGKFECTTCKRIFHSYQALGGHRASHKKIKGCFGSNNDNSIQIEIEIETELSPNNKIESLQNEELGFDDYDDDDDDEAEEEDNKTAKKVNKVHECPICLKVFASGQALGGHKRSHTAKIEEQEEEQVQEIRVRDLLDLNVPAAAATTTEEDETNNSFNVDSNNNKRHWWEEAPLLGLISLN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03223 490 MobiDBLite consensus disorder prediction 31 71 - -
Adu01g03223 490 SUPERFAMILY beta-beta-alpha zinc fingers 15 43 IPR036236 -
Adu01g03223 490 MobiDBLite consensus disorder prediction 373 389 - -
Adu01g03223 490 MobiDBLite consensus disorder prediction 40 54 - -
Adu01g03223 490 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Adu01g03223 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 402 429 IPR013087 -
Adu01g03223 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 340 IPR013087 -
Adu01g03223 490 MobiDBLite consensus disorder prediction 363 396 - -
Adu01g03223 490 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 488 - -
Adu01g03223 490 MobiDBLite consensus disorder prediction 155 179 - -
Adu01g03223 490 SMART c2h2final6 108 130 IPR013087 -
Adu01g03223 490 SMART c2h2final6 402 424 IPR013087 -
Adu01g03223 490 SMART c2h2final6 16 38 IPR013087 -
Adu01g03223 490 SMART c2h2final6 313 335 IPR013087 -
Adu01g03223 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Adu01g03223 490 SUPERFAMILY beta-beta-alpha zinc fingers 109 335 IPR036236 -
Adu01g03223 490 MobiDBLite consensus disorder prediction 55 70 - -
Adu01g03223 490 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 488 - -
Adu01g03223 490 SUPERFAMILY beta-beta-alpha zinc fingers 399 427 IPR036236 -
Adu01g03223 490 ProSitePatterns Zinc finger C2H2 type domain signature. 404 424 IPR013087 -
Adu01g03223 490 Gene3D Classic Zinc Finger 3 66 - -
Adu01g03223 490 ProSitePatterns Zinc finger C2H2 type domain signature. 315 335 IPR013087 -
Adu01g03223 490 ProSitePatterns Zinc finger C2H2 type domain signature. 110 132 IPR013087 -
Adu01g03223 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Adu01g03223 490 Pfam C2H2-type zinc finger 110 130 - -
Adu01g03223 490 Pfam C2H2-type zinc finger 15 38 - -
Adu01g03223 490 Pfam C2H2-type zinc finger 401 425 - -
Adu01g03223 490 Pfam C2H2-type zinc finger 313 337 - -
Adu01g03223 490 Gene3D Classic Zinc Finger 309 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03223 Adu-Chr1 104638088 104639895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03223 395 452 C2H2 Transcription Factor Family AT1G26610 52.459 6.70e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu01g03223 zf-C2H2_6 5.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03223 - - aip:107619267 790.801