Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03210 ATGTTTGACATACGGTGCCACTATGAGGTTCTCGGCCTTCCCCGTGACTCCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTAGCCCTGCAGCGCCACCCCGACAAGCTGGTCCAATCAGGTATCTCCCAATCGGAAGCCACTGCGCAGTTTCAGGAGCTTCAGCACGCCTACGAGGTACTCTCTGATCCCAAAGAACGCTCCTGGTACGACTCTCATCGCTCTCAGATCCTCTTCTCCGATCCCGACACCCTCCGCAACTCCTCTGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTTCTCCGGCTACTCCGATTCCGGCAGAGGCTTCTACAAGGTGTATTCTGATGTTTTCGATAAGATTCACGCTAATGAGATCAATTTCGTGAAGAAGTTAGGGTTAGGTGTTGATTCCATTAGGCAAGCTCCTGTTATGGGTAATTTAGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCGAACCGGCGGTCGCGGCGGCTTATGGAGGAGGAAAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGTGAGGAGATTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGATGAAGAAGGAGAAGGAGGAGTTGAAGAGGAAGGAGGAGCAGAAGGAGAAGAAGAAAAGGTTGGAAAAGGAGAGGAGGGAGAGGGCAATGGCATACGAGGAGCCGGAGTGGGCGAAGGTGGATGAGGGCGAGGACGGGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGAGGGGAAGAAGGGTGGTGAGAAGGAATTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGATTGAGGATGAGGATGAGGAGGTTGCTATGGAGGATTTGGAGAGTGAGATTGAGGTGGAAGGAAGAGAAGGGAAGGAAGGGTTGGAGAGTGAGGAGGATGCTGATCACGTGGTTGAGGATTTGGAGGAGAGGATTAGAGATAGTCTTAATGTTGCAGAGGAGAGCACTAGAAATGGAGTCGAGCCTGATGATGATGACGAGGAAGAATTTTATGATGCTTCACATGAAAAGGAAGGCAATGTGGTTAGTGTGTCTGTAGATGGTGGTGATGATGATGATGAAATTGGTGCTCTCGAAGCAATGATTGCAGGTCACAAGAGCAGAAAGCCACATGCTTCAACGCGCAAGCCCAATGCCCCAGTGCCTCCAACTCAAATTGAGAATGAGGATGATGGGGTTGGCCCTATGGAATACGAAAACCGGAAGGGCGCAAGAAAGAAACGCGGATCCAAGAAAGAAAAGGGTAGGAAAAATCCAGAAGAATCCCGCACAGCAGGCGTCAATGGCGATGAAGAGCATAATAACAACAACGATGATGGGAATGGCAATTCTCATGCAGAGGAGTCTTCTTTCCAATTTAACGTGGAGAATGTGATTAATGGTAAAGAGGACGAGCATGATGGTAGAGATAAGACTTCAAATAAACCAGCTGATAAGAGAGGAGATGCAAAGGACACAAAATCCAAAGCTAAAACTTCATCAAAAGGAAGAAAAGCCAAGGGTGCGTCAAAGAATCATGGCAATACTTGCGAGACCTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAGGTAGATAG 1833 0.4812 MFDIRCHYEVLGLPRDSTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDTLRNSSVPDLFSFFSNTVFSGYSDSGRGFYKVYSDVFDKIHANEINFVKKLGLGVDSIRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPNRRSRRLMEEENNKVRKKARREYNDTVRRLAEFVKKRDKRVIDMKMKKEKEELKRKEEQKEKKKRLEKERRERAMAYEEPEWAKVDEGEDGEDDLWFEEAEEEGKKGGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDEDEEVAMEDLESEIEVEGREGKEGLESEEDADHVVEDLEERIRDSLNVAEESTRNGVEPDDDDEEEFYDASHEKEGNVVSVSVDGGDDDDEIGALEAMIAGHKSRKPHASTRKPNAPVPPTQIENEDDGVGPMEYENRKGARKKRGSKKEKGRKNPEESRTAGVNGDEEHNNNNDDGNGNSHAEESSFQFNVENVINGKEDEHDGRDKTSNKPADKRGDAKDTKSKAKTSSKGRKAKGASKNHGNTCETCGEEFESRNKLHKHLGDSGHAKIKGR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03210 610 SMART dnaj_3 5 67 IPR001623 -
Adu01g03210 610 SMART c2h2final6 580 604 IPR013087 -
Adu01g03210 610 SMART c2h2final6 298 322 IPR013087 -
Adu01g03210 610 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 327 IPR013087 -
Adu01g03210 610 Coils Coil 319 339 - -
Adu01g03210 610 Pfam Zinc-finger double-stranded RNA-binding 298 323 IPR022755 -
Adu01g03210 610 Coils Coil 370 390 - -
Adu01g03210 610 Gene3D DnaJ domain 3 87 IPR036869 -
Adu01g03210 610 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Adu01g03210 610 SUPERFAMILY beta-beta-alpha zinc fingers 286 343 IPR036236 -
Adu01g03210 610 SUPERFAMILY Chaperone J-domain 2 76 IPR036869 -
Adu01g03210 610 MobiDBLite consensus disorder prediction 313 330 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 583 610 - -
Adu01g03210 610 ProSitePatterns Zinc finger C2H2 type domain signature. 582 604 IPR013087 -
Adu01g03210 610 MobiDBLite consensus disorder prediction 531 564 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 313 610 - -
Adu01g03210 610 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
Adu01g03210 610 Coils Coil 225 265 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 331 349 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 237 258 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 350 364 - -
Adu01g03210 610 Pfam DnaJ domain 7 72 IPR001623 -
Adu01g03210 610 PRINTS DnaJ domain signature 8 26 IPR001623 -
Adu01g03210 610 PRINTS DnaJ domain signature 26 41 IPR001623 -
Adu01g03210 610 PRINTS DnaJ domain signature 47 67 IPR001623 -
Adu01g03210 610 ProSiteProfiles Zinc finger C2H2 type domain profile. 580 609 IPR013087 -
Adu01g03210 610 MobiDBLite consensus disorder prediction 486 510 - -
Adu01g03210 610 MobiDBLite consensus disorder prediction 511 529 - -
Adu01g03210 610 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 610 IPR044648 -
Adu01g03210 610 ProSiteProfiles dnaJ domain profile. 6 75 IPR001623 -
Adu01g03210 610 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Adu01g03210 610 Gene3D Classic Zinc Finger 285 344 - -
Adu01g03210 610 CDD DnaJ 6 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03210 Adu-Chr1 104280304 104284974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03210 5 610 C2H2 Transcription Factor Family AT1G74250 48.678 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu01g03210 DnaJ 1e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03210 K09506 - gmx:100788305 779.63