Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03207 ATGGCTTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTATTTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGATTAGGGTAAATTATGCTAATGAAAGGCCCCGTGGATTCGGCGGTGGAGGTGGTGGTTTTGGTGGTTCTTATGGAAATGCACCATATGGTGCTGGTGCTGGTGCTGGCTACGGTAGTGCTTACGGTAACTCTCCTTATGATGGTGCTCCAGGTGGTGGTGGTGGCGGTGGCGGTTATGGTGGCAATGCTGCTGGAGGTTACGGTGGAGGCGGCTATGGATCTGGTGGCAATTATGGTCGCGGTGGCTATGACAATAACTATTCCACTCCTGACAGTTTTGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGGTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGGTATGGCAGTAGTGGCCAACTGGATAACAAAGAAACCAGCATTGAAGGCAACGATATGGACTTAGTCGAAGGAAATTACAAAGATGACAATGATGATACCGACGACTTTGCCAAAAGGGCCTGA 948 0.4768 MAFFGRIGNLLRNAANKQISSELLSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRGFGGGGGGFGGSYGNAPYGAGAGAGYGSAYGNSPYDGAPGGGGGGGGYGGNAAGGYGGGGYGSGGNYGRGGYDNNYSTPDSFGSSSAGGSGDYGGNSGNFGVAGGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSGQLDNKETSIEGNDMDLVEGNYKDDNDDTDDFAKRA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03207 315 CDD RRM_HP0827_like 43 119 - -
Adu01g03207 315 Gene3D - 14 137 IPR012677 -
Adu01g03207 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Adu01g03207 315 MobiDBLite consensus disorder prediction 288 315 - -
Adu01g03207 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Adu01g03207 315 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 314 - -
Adu01g03207 315 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 314 - -
Adu01g03207 315 PRINTS Eggshell protein signature 38 54 - -
Adu01g03207 315 PRINTS Eggshell protein signature 126 141 - -
Adu01g03207 315 PRINTS Eggshell protein signature 153 163 - -
Adu01g03207 315 PRINTS Eggshell protein signature 177 195 - -
Adu01g03207 315 MobiDBLite consensus disorder prediction 256 315 - -
Adu01g03207 315 SUPERFAMILY RNA-binding domain, RBD 38 147 IPR035979 GO:0003676
Adu01g03207 315 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03207 Adu-Chr1 104229315 104232106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03207 42 181 Eukaryotic Initiation Factors Gene Family AT3G16380 32.639 9.48e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03207 K12741 - gmx:100799124 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03207 01 104229315 104232106 Adu01g03207 01 104229315 104232106 ECH