Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03196 ATGCTGCATTGTCGTTTTTCTGCTTACTGTGTTGTTGCGGATGAATCTGCTGGAAGGCAGGTTCCTATTGCGTTTCTAGAGCGAGTGAAGGATGATCTTGTTTCCAAATATGGTGCCTCCGATAAGGCCGGTACTAATGCTGCCACCAACAGCCTTAACAAGGAGTTTGGAAAGATGCCAGCTTTGATGTCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACTCAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAGGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGTGTTTGGGATTGTTGAGAGGAAGAAACAACAAATCGAGGCTGCCCCATTTGCAGCAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTGCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAGTGGAGAACAGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCTGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCGCTTGATACTGTCTCGCCTTCGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGAAACACTATTACTGTGTAGCGAGGTTACAGCATAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTGACCATATGTGAAGAGTCCGAAGTGTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1740 0.458 MLHCRFSAYCVVADESAGRQVPIAFLERVKDDLVSKYGASDKAGTNAATNSLNKEFGKMPALMSSRFLLLVGESFPIRRALATHKNASSLLHSSIHCMSQVEPPNHGSLTLSSVGFQGEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIGSSEKKKVFGIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNKVSKSASGGDSGGKMGIEAVVVAPSRELGMQIVREFEKILGVENRKKLSRRINLPLLLAHLDMHRILEHVGRRSGADLDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVSPSGPINLSRPSVGSTPDPTKPSQASVESLPPALKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03196 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 363 IPR027417 -
Adu01g03196 579 SMART helicmild6 446 527 IPR001650 -
Adu01g03196 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 422 566 IPR001650 -
Adu01g03196 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 362 IPR014001 -
Adu01g03196 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 309 555 - -
Adu01g03196 579 Pfam Helicase conserved C-terminal domain 425 527 IPR001650 -
Adu01g03196 579 Gene3D - 404 560 IPR027417 -
Adu01g03196 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 181 209 IPR014014 GO:0003724
Adu01g03196 579 CDD SF2_C_DEAD 407 536 - -
Adu01g03196 579 Gene3D Longin domain 6 66 - -
Adu01g03196 579 CDD Longin 8 58 IPR010908 -
Adu01g03196 579 Pfam DEAD/DEAH box helicase 205 289 IPR011545 GO:0003676|GO:0005524
Adu01g03196 579 Pfam Regulated-SNARE-like domain 8 56 IPR010908 -
Adu01g03196 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 67 292 - -
Adu01g03196 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 557 IPR027417 -
Adu01g03196 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 67 292 - -
Adu01g03196 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 309 555 - -
Adu01g03196 579 SMART ultradead3 200 373 IPR014001 -
Adu01g03196 579 MobiDBLite consensus disorder prediction 379 400 - -
Adu01g03196 579 Gene3D - 156 302 IPR027417 -
Adu01g03196 579 MobiDBLite consensus disorder prediction 125 151 - -
Adu01g03196 579 ProSiteProfiles Longin domain profile. 8 60 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03196 Adu-Chr1 104031411 104034402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03196 182 549 Eukaryotic Initiation Factors Gene Family AT3G19760 23.698 4.02e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03196 - - aip:107613119 890.182