Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03181 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTCACGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATCTCAGTGTTATGCGATGCCGAAGTCGCACTTATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGTATGGAAAGGATTCTTGAACGGTATGAGAGGTACTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCCGCCAAATGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACACAGAAATCAAAGGAATTTTATGGGGGAAGGTCTCGATACCCTAAGTCTGAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAGGAACAAAACAATGTGCTCGCCAAGAAGGTGATGATAATGTTGTATTCTTTTTCATTAAAATTTCATTATTATTGTTGTTTGGATTTCAAAGAATTGGTGATGTGCCCTCTCTCCTTATAA 609 0.4122 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAEKQLISNDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKKVMIMLYSFSLKFHYYCCLDFKELVMCPLSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03181 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g03181 202 Coils Coil 123 146 - -
Adu01g03181 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Adu01g03181 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Adu01g03181 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 173 - -
Adu01g03181 202 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g03181 202 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Adu01g03181 202 Coils Coil 152 172 - -
Adu01g03181 202 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Adu01g03181 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu01g03181 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03181 Adu-Chr1 103695591 103701396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03181 1 173 MADS-box Gene Family AT1G26310 69.540 5.91e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu01g03181 K-box 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03181 K09264 - gmx:100816836 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03181 01 103695591 103701396 Adu10g02179 10 94750387 94758519 PCT