Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03161 ATGGCAGATGTAACGTACCTTCTCCACCATCACCACCCTGAACACGACGACGACCCTCACCAAACGCTAACCCTACCACCCTACTGGTCTCCTCACGATTTCGATTTCTACGCCTCCGATCCCGAATTCCCCCAACAACCGCATAACAACCACCACCACCACCACCACCACCATCGCCACCACCACTTTCCCCAATCTGGTTCGTCCTCCATTCTCGACCGAGAGAATCAGGTCAATTTCGTTATGGATTTATTCCAGCAGCGTGTTGAGCAGTCACAGGTCATGGGACACCCTTTAAACGACGCCGTTTTCGGGAGCAGCGATTTTGGGATTGAAATGGACGCTTTTACCCTTGATTTAGGGTTCCCTTCTGACAGGGACTCCCACCACCGCGCCAATGCCGCTGGAGGGGATTCTTCCGCCGGTGGTGTCGTTGTCGTCGACGATGACGATTTCTTCTTCGGGAGGAGGGTTTCGGGGTCCGAATCCGGCGACGCGGCGGCGTTCGAGAACTGCGTGAGCCTCCTAGGGTTCGGATCGGACTCCGACGAGGAAGAAGACAACGGCGTTCTCCGAATCTGCGTGCATTCCGACGAAGAGTACACTTTGCACGACGAAAACGACGACGTTTCGAGTATTCCTCTGTGCTGGGACTCGCTGCAGTTGGAAGATAACAGAGAGAACAACGACGATTTCGAGTGGGAGGAGGTTGATGGAAGGGTCGACGAGAGGGAAGTTCTAAGCATGCTCACCGTCGAAGACGATAGATCCGGCTCGGTGTCCGTTTCGCCGATCACCGGAATCGAAGAAGCCGAAGAAGAAGAGGTTAACGTTTTTAGGGTTGGAGGAATGGAGAATTTGGAATGGGAAGTGCTTCTGAATGCAAACAATTTGGACACAATCACGAGCCCGGATTTGGATCACGATTCCGAACCCTATTTTGGTGATCACGATGATTATATTTACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGCCGATAATGATAATCCATTGAACGGTAGGCCTCCGGCTTCGGCTTCCGTCGTCCGGAGCCTGCCGTCAGTGGTGGTAACAAAGGATGACGTGGAAGGGAACAATGCGCTCTGTGCTGTTTGCAAGGATGAGTTTTGTGTTGGGGAGAGTGTAAAGGTGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCATGGTTGGGGATTAGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCCACTGATGATGCTGATTATGAACATTCGCCTCCAGAGTTTGATGAGAATTTTAGGTTAAGGGACTGTTGCCATGGTAGTAAATTTTGA 1335 0.5176 MADVTYLLHHHHPEHDDDPHQTLTLPPYWSPHDFDFYASDPEFPQQPHNNHHHHHHHHRHHHFPQSGSSSILDRENQVNFVMDLFQQRVEQSQVMGHPLNDAVFGSSDFGIEMDAFTLDLGFPSDRDSHHRANAAGGDSSAGGVVVVDDDDFFFGRRVSGSESGDAAAFENCVSLLGFGSDSDEEEDNGVLRICVHSDEEYTLHDENDDVSSIPLCWDSLQLEDNRENNDDFEWEEVDGRVDEREVLSMLTVEDDRSGSVSVSPITGIEEAEEEEVNVFRVGGMENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYIYTAEYEMMFGQFADNDNPLNGRPPASASVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGESVKVLPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDDADYEHSPPEFDENFRLRDCCHGSKF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03161 444 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 72 424 - -
Adu01g03161 444 SUPERFAMILY RING/U-box 354 418 - -
Adu01g03161 444 PANTHER - 72 424 - -
Adu01g03161 444 SMART ring_2 371 411 IPR001841 -
Adu01g03161 444 ProSiteProfiles Zinc finger RING-type profile. 371 412 IPR001841 -
Adu01g03161 444 MobiDBLite consensus disorder prediction 39 70 - -
Adu01g03161 444 MobiDBLite consensus disorder prediction 49 64 - -
Adu01g03161 444 CDD RING-H2_RNF126_like 371 412 - -
Adu01g03161 444 Pfam Ring finger domain 371 412 IPR001841 -
Adu01g03161 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 418 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03161 Adu-Chr1 103407785 103409731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03161 8 418 C3H Transcription Factor Family AT5G60820 36.830 2.41e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03161 - - adu:107469048 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03161 01 103407785 103409731 Adu01g03161 01 103407785 103409731 ECH