Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03126 ATGAACGAAACGAAGAAAAAGATGAAGAATAAGAATAAGAAGAAGCGGCCTCGGGATTCTGAATCAGAGAACCAATCAGCTGAACCTCAACAAGAAGAGGGCGCAGAATCCTTGGAAAACAATGCGAACAAGAAGAAGAAGAATAAGAAGTTGAAGGGAGTGGAAGAAGATAGCTACGTTGATAAAAATGGTGAAGAAGAAGAAGAAGAAAAGGAAGAAGAGAGGAAAGAGAAGAAGAATAAGGGTGGTGGCGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTCGGGATATGGGGTTCTCATACATGACTCAGATTCAATCAAGGGCAATTCCACATCTTCTAATAGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGGAAAACCCTTGCTTTTCTGGTCCCTGCTGTGGAGCTTCTCTATAATGTTCAGTTCACGCCTCGTAATGGTGCTGGTGTTATTATCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTAGCCAAGGAACTCCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCCGAACGCATTGCTAAAGGGGTCAATCTGCTCGTGGCAACTCCTGGTCGTCTTCTGGATCATCTTCAGAATACAAAAGGGTTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATACTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACGCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGTATAGATCCTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATATACACCGCCTCGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTTGCAAACCCACCAAATGTGACTCTGAACTTAAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACAGCAGCCCTCATGGAAAAAGAAATTTTCATTCTAAAAAGCAATTTGTGAGGCATTAA 1719 0.4154 MNETKKKMKNKNKKKRPRDSESENQSAEPQQEEGAESLENNANKKKKNKKLKGVEEDSYVDKNGEEEEEEKEEERKEKKNKGGGGGIMSNDEFSSLGLSEPTSKAIRDMGFSYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIIICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAYRSYLLAYNSHSMKDIFNIHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHSSPHGKRNFHSKKQFVRH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03126 572 Coils Coil 61 81 - -
Adu01g03126 572 MobiDBLite consensus disorder prediction 543 557 - -
Adu01g03126 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 297 IPR014001 -
Adu01g03126 572 Gene3D - 35 301 IPR027417 -
Adu01g03126 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 453 IPR027417 -
Adu01g03126 572 PANTHER RNA HELICASE 35 560 - -
Adu01g03126 572 Pfam Helicase conserved C-terminal domain 327 431 IPR001650 -
Adu01g03126 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 35 560 - -
Adu01g03126 572 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Adu01g03126 572 Pfam Domain of unknown function (DUF4217) 473 533 IPR025313 -
Adu01g03126 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 243 251 IPR000629 -
Adu01g03126 572 CDD DEADc_DDX18 102 299 IPR044773 GO:0003724|GO:0005524
Adu01g03126 572 MobiDBLite consensus disorder prediction 38 59 - -
Adu01g03126 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 119 IPR014014 GO:0003724
Adu01g03126 572 SMART helicmild6 351 432 IPR001650 -
Adu01g03126 572 SMART DUF4217_3 472 535 IPR025313 -
Adu01g03126 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 481 IPR001650 -
Adu01g03126 572 MobiDBLite consensus disorder prediction 536 572 - -
Adu01g03126 572 MobiDBLite consensus disorder prediction 1 96 - -
Adu01g03126 572 Gene3D - 308 551 IPR027417 -
Adu01g03126 572 CDD SF2_C_DEAD 312 442 - -
Adu01g03126 572 SMART ultradead3 110 315 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03126 Adu-Chr1 102899406 102903770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03126 86 451 Eukaryotic Initiation Factors Gene Family AT3G19760 28.065 5.98e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03126 K13179 - gmx:100797375 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03126 01 102899406 102903770 Adu01g03126 01 102899406 102903770 ECH