Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03112 ATGTATTCATCACCAAATAGTAGTAACACTATTCATCACTTCATCAATGGCAACGACGACCAAGTCTCCCCCTACCCTAATAACCAACCATTATTATTTCCCTCTTCTTCGTCTTCTTCTAATGTTAGGCCTTTTTCAATTGAAAGCAGCCCTTCTTCAAAAGAAGAACAAGCCAATAATAATAATAATTGTGCTTCTACTCTTCCTCCTTCTCTTCCTCTTTCTCCTCCTCCCACTCCTTCTTTTTCTTTCTTTCAGTTCCCTTACTCTCCATTATTTGAAGACAATGAGATTTTCCTTAACGGAGAATTTCACTTTCTTCATCACCAGTCTCTGGCACAGTCTGATCACAACGATCAGGCAGGAGTAGTAAACATGGAGGTTTCAATCACCAACACTAACAAGAACTCATCAGGGCAAGGCATGACCATCACCACCGCTGCCGCCACCACCACCACCGCTCCTGTGGCTACAACCACCACCACAAGAAGAAGATCAAGCAAGAGGGACCGGCACAGCAAGATCAACACTGCTAGGGGACTAAGGGACAGAAGAATGAGATTGTCCCTTGAAGTTGCTAGAAGATTCTTCGGTCTTCAAGATATGCTTGGATTCGACAAAGCAAGCAAGACCGTTGAGTGGCTGCTCAACCAAGCGAAAGTGGAGATCAAACAACTCGCAAGGGAGAAGAAGAAGAATCACCAAAGCTGTAGCAGCTTCAATGGCAAAAGCGCCTCTTCAACTTCTGAGTGCGAAGGGGTTTCGAGCTTGGACGAAGTGGCCATAAGCGAAAATCAAGGACATAATGGAAAACTATTACCCACACCAACAACTACCACGAAGACGAAGAAGCGAAGGGGTAGTAACAAAGTTTCAAGGAAAAGCTCTTTCAATCCAATTGGTAAAGAATCGAGGGAAAAGGCAAGGGAAAGGGCCCGGGAAAGAACAAGAGAGAAGACCAGGTTGAAGAAGCTTGCTCATCAAGAATCAACGGCAAATAATAATGATCAAAATAACAATAATAATGATAATGATAATAATAAGCAATGCAACAACAACAATGATGATGTGGCAACAAGTGTTATTGGATTGAATCGATTGAGTACATGGAACCCCTTTGAGAATGTTGAAGAATCTGCAGGTACTAATAATAACGATAGTAATCACCATAGTCAAGGCTTGAATCCTCCTTCTTCCCTTACTCAAGCAGAAGCAGAAGAACCAAGTTCTTCGGCGAAGGATCACCACCGGCCTTTGGAAGCTGCTGCGGAGGACATGGTGCATCATGAAGAAGAATCTCTTGTGATTATGAGCAAATGGAGTCCAACAATGATCTTCAATTCTCTCGTCAATAACTCCTCAATCTTTCAAGAACATCATCAATTTGCAGAATTTCAGTCCATGGGAAAATCCTGGGAGACCTACAACAATTACGCGTAA 1440 0.4278 MYSSPNSSNTIHHFINGNDDQVSPYPNNQPLLFPSSSSSSNVRPFSIESSPSSKEEQANNNNNCASTLPPSLPLSPPPTPSFSFFQFPYSPLFEDNEIFLNGEFHFLHHQSLAQSDHNDQAGVVNMEVSITNTNKNSSGQGMTITTAAATTTTAPVATTTTTRRRSSKRDRHSKINTARGLRDRRMRLSLEVARRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKKKNHQSCSSFNGKSASSTSECEGVSSLDEVAISENQGHNGKLLPTPTTTTKTKKRRGSNKVSRKSSFNPIGKESREKARERARERTREKTRLKKLAHQESTANNNDQNNNNNDNDNNKQCNNNNDDVATSVIGLNRLSTWNPFENVEESAGTNNNDSNHHSQGLNPPSSLTQAEAEEPSSSAKDHHRPLEAAAEDMVHHEEESLVIMSKWSPTMIFNSLVNNSSIFQEHHQFAEFQSMGKSWETYNNYA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03112 479 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 93 418 IPR005333 GO:0003700
Adu01g03112 479 MobiDBLite consensus disorder prediction 299 326 - -
Adu01g03112 479 Pfam TCP family transcription factor 167 321 IPR017887 -
Adu01g03112 479 MobiDBLite consensus disorder prediction 152 173 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 1 69 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 263 356 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 1 75 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 376 416 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 327 356 - -
Adu01g03112 479 ProSiteProfiles R domain profile. 302 319 IPR017888 -
Adu01g03112 479 MobiDBLite consensus disorder prediction 263 282 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 376 407 - -
Adu01g03112 479 Coils Coil 216 236 - -
Adu01g03112 479 ProSiteProfiles TCP domain profile. 168 226 IPR017887 -
Adu01g03112 479 Coils Coil 305 325 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 229 251 - -
Adu01g03112 479 PANTHER TRANSCRIPTION FACTOR TCP18 93 418 - -
Adu01g03112 479 MobiDBLite consensus disorder prediction 237 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03112 Adu-Chr1 102686666 102688342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03112 164 316 TCP Transcription Factor Family AT3G18550 44.512 8.74e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Adu01g03112 TCP 1.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03112 - - adu:107471910 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g03081 04 119008471 119010431 Adu01g03112 01 102686666 102688342 ECH
Adu01g03112 01 102686666 102688342 Adu01g03112 01 102686666 102688342 ECH