Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03106 ATGTCATCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAGAAGACTCAAAAGAGCAATGGGAGAAGATTGGTGAAGAAGTTCCAAGCAAAACCATAGAAGAATTGAAGCAACATTACCAGTTACTAGTGGAAGATGTAACTGCAATAGAAGCTGGTCAAATACCATTCCCAAACTATACATCAGAAGAAACTACATCTTCAAGTAAAGATCTCCATGGATCTTCCAAGTCTTCAAATTCTGATAAGAGATCAAATTGTAACTATGGAAGTGGATTCTCTGGCTTAGGACATGATTCCTCAACCTCTCATAATGGTAAAGGATCCTTGTCAAGATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAACACAGGCTATTCTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTCGTGATTTCAAGGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTTCATAAGATTGAACTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGACATTACAAGTGTCAACAATGGAGATGTGGCCAATAATCAAGCACCAATTACAGGACAGCATGGAGGCACAACAATCTCATCAAGCACAATAGCTATGGGACAATCAATGAAGCATAGAGCACAACCACACCATCATCATCATCATATACCTGCTGGTTTAGGCATGTATGGTGCACCAGTTGGGCACCCTGTGGCTGCTCCTCATGGCCATATGGCATCTGCAGTTGGAACTCCGGTCATGCTTCCTCCCGGACCGCACCCTCATCCGCATCCACATCCTCATCATCCACCTTATGTTGTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCACCAATAA 936 0.4188 MSSSSGTIWSYEEEKAFENAIAMHWIEEDSKEQWEKIGEEVPSKTIEELKQHYQLLVEDVTAIEAGQIPFPNYTSEETTSSSKDLHGSSKSSNSDKRSNCNYGSGFSGLGHDSSTSHNGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHGGTTISSSTIAMGQSMKHRAQPHHHHHHIPAGLGMYGAPVGHPVAAPHGHMASAVGTPVMLPPGPHPHPHPHPHHPPYVVPLAYPMAPPTMHQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03106 311 PANTHER TRANSCRIPTION FACTOR MYBS1 5 310 - -
Adu01g03106 311 MobiDBLite consensus disorder prediction 71 123 - -
Adu01g03106 311 CDD SANT 9 57 IPR001005 -
Adu01g03106 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Adu01g03106 311 SMART sant 5 59 IPR001005 -
Adu01g03106 311 SMART sant 133 183 IPR001005 -
Adu01g03106 311 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Adu01g03106 311 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Adu01g03106 311 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Adu01g03106 311 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Adu01g03106 311 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Adu01g03106 311 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Adu01g03106 311 MobiDBLite consensus disorder prediction 71 135 - -
Adu01g03106 311 PANTHER TRANSCRIPTION FACTOR KUA1 5 310 - -
Adu01g03106 311 Gene3D - 135 187 - -
Adu01g03106 311 Gene3D - 1 70 - -
Adu01g03106 311 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Adu01g03106 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 183 IPR006447 GO:0003677
Adu01g03106 311 CDD SANT 136 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03106 Adu-Chr1 102555594 102557058 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g03106 Myb_DNA-binding 8.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03106 - - vun:114176836 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03106 01 102555594 102557058 Adu01g03106 01 102555594 102557058 ECH