Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03080 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGCAATAGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCAGCAATTTATAGCAAGACCCAACAAAGTAAGGCTCGAGAACTGCAAAAACATCAAGAGCAAGAGCTTCAGAATCCAAATCAGAGACAACAAATGCAAATGCAGCTCTATATGCAGAGATATGCTCAGCAGCAGGAACAGGAGCAGCAGTTACAGGAGCAACGGCAGCAGCAGCTTAGGGCTCAGCTTGTTAGTGGCAGCAGTATCCGTCCTATTAACAATGATCCTTCAATCAGGCAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCTCTCAAGCAAAAGGGAAGTGGTAATGTTGGCCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGTGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGGACATGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAGGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCTGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGACCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTGTGTTCTCCGATGTTGACTCATCCGGATACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAGTTCACCTTCAACACCATCTACACAAACGCTCGGAGATGTGCCAAATCTGCAACAGAATGTTCCATCTTCCAAGTCATTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGAATTCTCATTCAAAGAGACTAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGATGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGGGTGGCGTAACTCAGATGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCGGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGGGCCATAATAACCTTGTCCGTTCGGTTTGCTGGAACAGTTCTGGAAAATATCTAGCATCTCTTAGTGATGATCTTGTTAGGGTATGGACAGTTGGATCAAGTAGCAAAGGGGAGTGCATTCATGAACTCAATGCATCCAGGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTGATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGTTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCTTGGCAGTATCTAGTGTTAATGGTTTGGTTGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2529 0.4409 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVAIDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKTQQSKARELQKHQEQELQNPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVSGSSIRPINNDPSIRQKRATSNAMATRVYEDRLKLPLQRDDLDDVALKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVIPDGSFVGGHGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRPNSAYDSIPNVLAAQVCSPMLTHPDTDMFLKQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPNLQQNVPSSKSLLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKEFSFKETKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLDEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKGGVTQMRFQPRLGRLLAAAVDNLISIIDVETLGCTLKLQGHNNLVRSVCWNSSGKYLASLSDDLVRVWTVGSSSKGECIHELNASRNKFNTCAFHPFYPFLIIGCNEAIELWDFVQNKTLTLAAHEKLVSSLAVSSVNGLVASTSHDKHFKIWN 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03080 842 Pfam LisH 10 36 IPR006594 GO:0005515
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 810 842 - -
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 680 - -
Adu01g03080 842 PANTHER LISH-SSDP-WD40 3 842 - -
Adu01g03080 842 MobiDBLite consensus disorder prediction 412 491 - -
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 637 - -
Adu01g03080 842 MobiDBLite consensus disorder prediction 83 103 - -
Adu01g03080 842 ProSitePatterns Trp-Asp (WD) repeats signature. 621 635 IPR019775 -
Adu01g03080 842 Gene3D - 686 842 IPR015943 GO:0005515
Adu01g03080 842 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 842 IPR044716 GO:0003714
Adu01g03080 842 SMART Lish 8 40 IPR006594 GO:0005515
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 680 IPR001680 GO:0005515
Adu01g03080 842 SUPERFAMILY WD40 repeat-like 564 842 IPR036322 GO:0005515
Adu01g03080 842 SMART WD40_4 594 634 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 719 757 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 803 842 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 552 591 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 763 801 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 680 716 IPR001680 GO:0005515
Adu01g03080 842 SMART WD40_4 638 677 IPR001680 GO:0005515
Adu01g03080 842 Pfam WD domain, G-beta repeat 562 590 IPR001680 GO:0005515
Adu01g03080 842 Pfam WD domain, G-beta repeat 641 677 IPR001680 GO:0005515
Adu01g03080 842 Pfam WD domain, G-beta repeat 807 842 IPR001680 GO:0005515
Adu01g03080 842 Pfam WD domain, G-beta repeat 597 634 IPR001680 GO:0005515
Adu01g03080 842 Pfam WD domain, G-beta repeat 722 756 IPR001680 GO:0005515
Adu01g03080 842 Gene3D - 527 685 IPR015943 GO:0005515
Adu01g03080 842 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Adu01g03080 842 Coils Coil 101 136 - -
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 590 IPR001680 GO:0005515
Adu01g03080 842 CDD WD40 555 842 - -
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 726 758 IPR001680 GO:0005515
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 810 842 IPR001680 GO:0005515
Adu01g03080 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 637 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03080 Adu-Chr1 102088513 102094987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03080 639 842 Miscellaneous Gene Families AT5G08390 25.592 5.65e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Adu01g03080 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03080 - - aip:107624271 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03080 01 102088513 102094987 Adu01g03080 01 102088513 102094987 ECH