Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03040 ATGGACGAAGCTTCGTTGATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGCCTTAATCCAACATGTGCTTTCAGGCACCCTCCATTGGATGGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCTGTGCCTGCAAATAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATATTGCAATAAAGGCGACAGATGCTCATTTTTGCATGGGCATGATGAGAGCCATTTCACTGTAAAGCCTGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAATAAGGTGTTGTCAGGAACTGCCCCATCAACAACTGAAACTCATTCGAACCCATCGTTAACTGCCCCAAAGGCTTTGCCCACTTTCAAGCCTCCACCTAAGGAAGATCTTCAACTATCCTTACCAAAAAATGTTAAACAGCAAGAGGAGCAAGTAAATGGTCACATCGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCGGCAAACTTGGGCTATGAGGAGGATCCTGAATATCTTCCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGTATGAATTTGAAAACCCAGTTGAGTATGATAATATGTGCCGCAAAGCTGACATCCTGTATGAACAAGAAATGTATGATGATTATAGACGTTTAGATAGAGATCTTACTCGTGCTAATGGCAGAAGAGTTTGTGATTGTTCCAGTGATATAATCTTAGATTCTATGTTGACTAGGAAAAGGATTCAGCTGAGTGATATAGCTACCTGTGACGGGAAGTTAGATCTACGAGACCATCTGAGAAGACGAAGGGAAAGTAGTGGTCCACCTGATGCGAGTTTCATCAGACGACATGAATCCTCTTCTTTGATGGTTCGAAACCGGGAAAGGCATCAAAGGCATTACAATGAACAGAGACTAAGGGGAAGATTGTCATCGCAAGTGGGAATTACCACTATAGACCCCATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCCAAGGTTATCTAGGAATTCCCAGCAGCATTGGCCAAGAAAGCATTATAGAGAAAAGCCATCTAAACGCCAGTTTCATTCATCTAATGACTCCAGGAGACCAGTTTTCAAGCAAAGGAGATTTGTTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATTAGAGAAGAGAAGAAAAAGGCTGCAGGAAGTTTTCACTGCAAAAGCACATCACCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTGGAGATGTCAATGTCTGCAGCAACTGA 1452 0.438 MDEASLMRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDGQTGVSSEPTQSAVPANKTMVPCYFFFNGYCNKGDRCSFLHGHDESHFTVKPVKNDKGGTDPPNLENKVLSGTAPSTTETHSNPSLTAPKALPTFKPPPKEDLQLSLPKNVKQQEEQVNGHIEPDERWESSSPGFDVLVHDESANLGYEEDPEYLPDGEHEELNEQYLGYEFENPVEYDNMCRKADILYEQEMYDDYRRLDRDLTRANGRRVCDCSSDIILDSMLTRKRIQLSDIATCDGKLDLRDHLRRRRESSGPPDASFIRRHESSSLMVRNRERHQRHYNEQRLRGRLSSQVGITTIDPIGEVETLSIANKPRLSRNSQQHWPRKHYREKPSKRQFHSSNDSRRPVFKQRRFVHESSTFSGPKSLAEIREEKKKAAGSFHCKSTSPDFQDPKPLSEILKGKRSVDGVGDVNVCSN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03040 483 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 178 471 - -
Adu01g03040 483 MobiDBLite consensus disorder prediction 115 167 - -
Adu01g03040 483 Pfam Zinc-finger containing family 8 64 IPR041686 -
Adu01g03040 483 MobiDBLite consensus disorder prediction 379 415 - -
Adu01g03040 483 MobiDBLite consensus disorder prediction 313 334 - -
Adu01g03040 483 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Adu01g03040 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 106 IPR000571 GO:0046872
Adu01g03040 483 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Adu01g03040 483 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Adu01g03040 483 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Adu01g03040 483 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Adu01g03040 483 MobiDBLite consensus disorder prediction 130 153 - -
Adu01g03040 483 MobiDBLite consensus disorder prediction 386 400 - -
Adu01g03040 483 Gene3D - 72 132 - -
Adu01g03040 483 Gene3D - 2 63 - -
Adu01g03040 483 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 178 471 - -
Adu01g03040 483 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 179 - -
Adu01g03040 483 MobiDBLite consensus disorder prediction 401 415 - -
Adu01g03040 483 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Adu01g03040 483 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 179 - -
Adu01g03040 483 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03040 Adu-Chr1 101414862 101417328 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g03040 zf-CCCH_3 4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03040 - - adu:107469835 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03040 01 101414862 101417328 Adu01g03040 01 101414862 101417328 ECH