Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03003 ATGGTGCAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAGATTCGTCACCCACTCTTGAAGAGGAGGGTGTGGTTAGGGACATTTGAAACTGCGGAAGAAGCCGCAAGAGCCTATGATCAAGCTGCAATTTTGATGAGTGGCCGGAATGCCAAGACCAATTTCCCCATCATACACACACCGGACGGTGATCCAAAGGTTGTCAGCTCCACCGAGGAATCGGCGGCGCATTCTTCCTCCGCCTCCAATAAGGATCTAGAGGAGATTCTACACGCCAAGCTTCGAAAATGCGGTAAAGTTCCTTCACCTTCCATGACATGCTTGAGGCTCGACACGGAGAATTCACACATTGGTGTGTGGCAGAAGCGCGCTGGCCAGCGTTCTGATTCCAATTGGGTCATGAGGGTTCAGCTCGGTGCTGGAAACAACAAAACTAGTGGTGTTGCCATGAATTCCATGGTTGCTTCTTCTTCTTCGTCTTCGTCTTCGTCTTCTTCTTGTGATCTTCTTCAGTCTCCGTCATCAACCGTATCCGGTGGTGATCTGGTTAGGGGAGAGATGGATGAGGAGGAGAGAATCGCATTGCAGATGATTGAAGAGCTTCTCAACAGAAATTGTCCAAGTCCATCGTCCTTCAACAACAACAACTTGGATGAAACGGGTGTTCACCATGACCATAATAATAATGCTACCTTCTTTCTTTGA 726 0.4876 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIIHTPDGDPKVVSSTEESAAHSSSASNKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVQLGAGNNKTSGVAMNSMVASSSSSSSSSSSCDLLQSPSSTVSGGDLVRGEMDEEERIALQMIEELLNRNCPSPSSFNNNNLDETGVHHDHNNNATFFL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03003 241 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 MobiDBLite consensus disorder prediction 67 90 - -
Adu01g03003 241 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Adu01g03003 241 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Adu01g03003 241 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 219 - -
Adu01g03003 241 MobiDBLite consensus disorder prediction 159 186 - -
Adu01g03003 241 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 219 - -
Adu01g03003 241 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Adu01g03003 241 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03003 Adu-Chr1 100869546 100870693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03003 1 212 AP2-EREBP Transcription Factor Family AT1G15360 60.563 2.68e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu01g03003 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03003 - - adu:107472039 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03003 01 100869546 100870693 Adu08g02526 08 41216017 41217349 ECH
Adu01g03003 01 100869546 100870693 Adu01g03003 01 100869546 100870693 ECH