Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02996 ATGCCCAACATTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAGCATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCCAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGAGTTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCCTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAATTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCGGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCGCCTCTCTCAAGTAACTCCTTGAAAGGACCTCCTTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTCGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCTAAGGTTATTATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGGGGCGGCATGAGGGATGGTAACTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGGTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAGTAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGTGGTCGCAGTTACAGCCGCAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCAATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGCGGTGACCCAGAAGATCCCAATGCTCTGGCATAG 2844 0.4905 MPNILVKEHLRLRAHILCNHKHINSPPRACIICHISQTCLNLCSQVPSITCMVILMKTNKTSNQHSQRVRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADNFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSGPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNSLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGNFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRGDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRSRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGDPEDPNALA 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02996 947 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 472 IPR014001 -
Adu01g02996 947 MobiDBLite consensus disorder prediction 92 123 - -
Adu01g02996 947 Pfam DEAD/DEAH box helicase 291 461 IPR011545 GO:0003676|GO:0005524
Adu01g02996 947 Gene3D - 242 476 IPR027417 -
Adu01g02996 947 MobiDBLite consensus disorder prediction 642 947 - -
Adu01g02996 947 MobiDBLite consensus disorder prediction 908 927 - -
Adu01g02996 947 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 87 741 - -
Adu01g02996 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 622 IPR027417 -
Adu01g02996 947 MobiDBLite consensus disorder prediction 877 902 - -
Adu01g02996 947 MobiDBLite consensus disorder prediction 823 874 - -
Adu01g02996 947 MobiDBLite consensus disorder prediction 765 820 - -
Adu01g02996 947 MobiDBLite consensus disorder prediction 62 152 - -
Adu01g02996 947 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 418 426 IPR000629 -
Adu01g02996 947 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 645 IPR001650 -
Adu01g02996 947 SMART helicmild6 522 606 IPR001650 -
Adu01g02996 947 Gene3D - 477 647 IPR027417 -
Adu01g02996 947 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 267 295 IPR014014 GO:0003724
Adu01g02996 947 CDD SF2_C_DEAD 486 615 - -
Adu01g02996 947 SMART ultradead3 286 489 IPR014001 -
Adu01g02996 947 Pfam Helicase conserved C-terminal domain 498 606 IPR001650 -
Adu01g02996 947 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02996 Adu-Chr1 100785939 100792204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02996 255 644 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 4.02e-68 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02996 K12823 - gmx:100807830 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02996 01 100785939 100792204 Adu04g00836 04 12404323 12410482 PCT