Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02963 ATGGAGGTAGAGGATGATGACTGGGACTTGACCGCAGAAGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAAATTGCTCAACTTCGCGACTCTTCTACCCCTCCTTCTTCTCAACAATTCAATCTGCACCAACACCAACAACACCATTTTCCAAAACCACCTTCTGCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCGGATTCCCGTCCTCAAAGGGTGGACGCTTTGCCTCAAGGAGGTAAAGCATTACCCCCCTCATTGAAACCAGGGACAAAAAAGGATGAACCTTCTAAAGAACTGCCGAAGTTTTCCGTCAAATTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTTCACATGCTAACTTCATCAAGTTATGGATGTTCCCACTTTCTTCCTTGTCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGTGGAGAATTTAGATCCTTTAGTGCACCGTGCCATTGTTTCTGCATCCGCTGTTCCAGATCTTCGAGATCGTTACGACAAGATCCCTAGTTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTATTGCCACATTATGTTGTGTTGCTTGTATAATTTTTCTTACCTTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCATCATTGCGCCTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCTTCAGATATACTTATCGTCTTACCTCAAAGTGGTGGATCAAACAGAGGAGGCTTCAATATAGTATCCCCAAGTGCCAAAAGTAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCACAACATTGGACTTTAAGGTTGTAATTGCAGATGAATCACACTATCTGAAGAATGCTCAGGCAAAGAGGACTACTGCAACTCTTCCTGTTATAAAGAAAGCTCAATACGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGGCGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATACGAAGGCTTAAAAAAGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTAGCTGACAAGGACATGAAGCAAATTAACGCTTTATTCCGTGAGTTGGAGGTGGTAAAAGCCAAAATTAAGTCTGCCAAATCAAAAGATGAGGCTGAATCTCTTAAGTTTACTCAAAAAAATCTGATTAACAAGGTTTGCATGGAAGAAGTTCTGAATATAATCATGACTTGTACAATTTGTTTGGAAGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATGCGATACATGAGTTCCTTCTTAGGAAAAGAGTGGGTTGCATCCGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTCTATCAAGGCAGCTGTGTTATCCATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAGGCCGAAGATCGTGCTCATAGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAAGTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAATACCTTAGCTGTCTCAAATAATCAACCATTGAGTAGCCCATCAAAGCATACTACTATTGAGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGATCAGAACATCAGCCTGACCCAAAACGGCCGCGTCAGTCATGA 2070 0.4155 MEVEDDDWDLTAEELDSLERDAFQKIAQLRDSSTPPSSQQFNLHQHQQHHFPKPPSANHSQPFPPNPISDSRPQRVDALPQGGKALPPSLKPGTKKDEPSKELPKFSVKFFLHSSGHVAAKFQYDQVSHANFIKLWMFPLSSLSEAEKVLGEISNYKVQVENLDPLVHRAIVSASAVPDLRDRYDKIPSYIESKLLPFQREGVRYCHIMLCCLYNFSYLLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSPSAKSNIRLDGLFNIISYDLVPKLQNMLTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKSAKSKDEAESLKFTQKNLINKVCMEEVLNIIMTCTICLEAGCKFLIFAHHQPMIDAIHEFLLRKRVGCIRIDGGTPAASRQQLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQVKLDNLGQMLDGHENTLAVSNNQPLSSPSKHTTIEHSPSKQRTLDQFVRRCDNVDRSEHQPDPKRPRQS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02963 689 MobiDBLite consensus disorder prediction 22 101 - -
Adu01g02963 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 642 IPR027417 -
Adu01g02963 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 638 IPR001650 -
Adu01g02963 689 SMART helicmild6 512 595 IPR001650 -
Adu01g02963 689 CDD SF2_C_SNF 481 606 - -
Adu01g02963 689 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 672 - -
Adu01g02963 689 Coils Coil 442 462 - -
Adu01g02963 689 Pfam Helicase conserved C-terminal domain 494 595 IPR001650 -
Adu01g02963 689 MobiDBLite consensus disorder prediction 27 55 - -
Adu01g02963 689 Pfam SNF2-related domain 231 471 IPR000330 GO:0005524|GO:0140658
Adu01g02963 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 371 IPR014001 -
Adu01g02963 689 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 672 IPR030101 GO:0006281|GO:0031297|GO:0036310
Adu01g02963 689 MobiDBLite consensus disorder prediction 641 689 - -
Adu01g02963 689 Gene3D - 169 438 IPR038718 -
Adu01g02963 689 Gene3D - 452 678 IPR027417 -
Adu01g02963 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 424 IPR027417 -
Adu01g02963 689 MobiDBLite consensus disorder prediction 655 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02963 Adu-Chr1 100197533 100203949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02963 380 622 RAD5 or RAD16-like Gene Family AT1G61140 28.958 3.51e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu01g02963 SNF2_N 5.1e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02963 K14440 - gmx:100778246 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02963 01 100197533 100203949 Adu01g02963 01 100197533 100203949 ECH