Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02919 ATGCAATGTGTGTTTTTCTTAACATTATGTTGCTTTGTTATAGACAAGGAGAATTTGTGTCTATATGGATTTCCGAATGAAACGTGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATCAACTTTGCCAGAGATGGCATGCAAGAGAAGGATTGGTTATCACTAGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGCTTTGGATTTGGCAAGAATGAAAGGAAAAGGCTTTTCCAGATGATCAATGATCTGCCAACTATCTTTGAAATTGTTACAGGAAGTGCCAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAACAAAAGCAAATCAAGTGGAAAGATGTCCCGTCAATCTGAGAATCAGGCCAAAGGAGTGAAGATGTCTGCACCACCGAAAGAAGAGGATGATAGTGGAGAAGAGGAAGAAGATGACGATGAACAAGGTGCGACATGTGGTGCCTGTGGCGATAATTATGGGAATGATGAATTCTGGATTTGTTGTGATATGTGCGAGAGATGGTTCCATGGCAAATGTGTTAAAATTACTCCCGCCAAGGCTGAGCACATCAAGCAATACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 675 0.4281 MQCVFFLTLCCFVIDKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEIVTGSAKQSKDQPAAHNNGNKSKSSGKMSRQSENQAKGVKMSAPPKEEDDSGEEEEDDDEQGATCGACGDNYGNDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02919 224 SUPERFAMILY FYVE/PHD zinc finger 159 221 IPR011011 -
Adu01g02919 224 Pfam Alfin 15 109 IPR021998 GO:0006355|GO:0042393
Adu01g02919 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 219 IPR013083 -
Adu01g02919 224 MobiDBLite consensus disorder prediction 112 168 - -
Adu01g02919 224 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 14 224 - -
Adu01g02919 224 MobiDBLite consensus disorder prediction 112 144 - -
Adu01g02919 224 Pfam PHD-finger 171 220 IPR019787 -
Adu01g02919 224 SMART PHD_3 170 218 IPR001965 -
Adu01g02919 224 MobiDBLite consensus disorder prediction 154 168 - -
Adu01g02919 224 ProSitePatterns Zinc finger PHD-type signature. 171 217 IPR019786 -
Adu01g02919 224 ProSiteProfiles Zinc finger PHD-type profile. 168 220 IPR019787 -
Adu01g02919 224 PANTHER CPG BINDING PROTEIN 14 224 IPR045104 GO:0006355|GO:0042393
Adu01g02919 224 CDD PHD_AL_plant 171 220 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02919 Adu-Chr1 99658211 99662256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02919 15 221 Alfin-like Transcription Factor Family AT1G14510 80.676 1.04e-101 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Adu01g02919 Alfin 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02919 - - gmx:100807826 379.793