Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02892 ATGAAACCCTCAATCGATGACGTTACCTTACCCCCCGCCGCCGCCACCAACTCTGCCGCACCATCCAAGCCTGTCTTCCTTACCAAAGCCCAGCGCGAGCAATTGGCACTCCAGCGCCGTCAGGAGGAAATCGCCAACCAGAAGCGCCGCCAAGAGCAGCTCCTTTCTCGTAATCGACCTTCCTCCGATTCCGCGGCCGATTCCAAACCCTCCGCTGACTCCGATCGGCGCGACCGCGACCGCGACCGCGACCGCGACAGGGACAGGGACAGGGATAGGGATAGGGACAGGGACAGAGACCGCGAACGAGAACGGGAACGGGAACGGGAGCGCGATAGGGCACGCGATCGGGACCGCGAGGCGGAGCGACGGAACCGAGAGAGGGAGCGCGAAGAGGAAAGTAGGGCTCGGGAACGAGCACGGTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTCGAATCCATCAAAGAACAGTACCTTGGTTCGAAGAAGCCGAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTTCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACATCTCGCGACATGAACTCCCTCTACCAGAACCCTCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATCCGTCGCAAGGACGGCGTGGAGGAGAAGCCCGAGGAGGCCGATGCCCAGCGCCGCAAGGAGGCTGCTGCCGACCTCTACGACACCTTCGACATGAGGGTTGACCGCCATTGGAGCGAGAAGAAGCTTGAGGAAATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTACAACATCTCCTACAAGGGTTCCAAAATACCTCGCCCCATGCGGAGCTGGGTAGAGAGCAAGCTCAGCAATGAGCTTCTGAAGGCGGTGGAGAAGGCTGGGTACAAGACCCCTTCCCCCATTCAGATGGCTGCAATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGAGTTACATTACTAGGCTTCCCCCCATGAGTGAGGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTTATGGCTCCGACTCGCGAGCTTGCCCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATTTGGGTATTAAGGTTGTCTCCATTGTTGGTGGTCAGTCCATTGAGGAACAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCTACTCCAGGTCGTTTGATAGATTGTTTAGAGCGGCGATATGCTGTGCTGAACCAATGCAATTATGTTGTTCTCGATGAGGCGGATCGCATGATTGATATGGGTTTTGAGCCACAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAACTTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATAGGACCACTTATATGTTCAGTGCCACCATGCCTCCAGCAGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCCGGAAAGGCAACTGACTTGATCAGCCAACATGTGATAATGATGAAGGAATCTGAGAAATTCCATAAGCTTCAAAGGTTGCTTGATGAGCTTAATGACAAGACGGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGACAAGGAAGGGTATCGTGTGACTACATTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTGGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCCACAGATGTTGCCGGACGTGGTATTGACATACCCGATGTGGCTCATGTGATAAACTATGATATGCCTGGGAACATTGAAATGTACACGCATCGCATTGGGCGTACTGGTCGTGCTGGAAAGACTGGTGTGGCAACAACATTCCTCACTCTTCAGGACACTGATGTCTTCTATGACCTCAAACAGATGCTTATTCAAAGCAACAGCCCTGTTCCACCTGAATTGGCAAGGCACGAAGCCTCCAAGTTCAAGCCAGGGACTATTCCCGACAGACCACCTAGACGAAATGACACTGTGTTTGCACATTAG 2184 0.5353 MKPSIDDVTLPPAAATNSAAPSKPVFLTKAQREQLALQRRQEEIANQKRRQEQLLSRNRPSSDSAADSKPSADSDRRDRDRDRDRDRDRDRDRDRDRDRDRERERERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02892 727 MobiDBLite consensus disorder prediction 702 727 - -
Adu01g02892 727 MobiDBLite consensus disorder prediction 220 255 - -
Adu01g02892 727 MobiDBLite consensus disorder prediction 37 56 - -
Adu01g02892 727 Gene3D - 268 537 IPR027417 -
Adu01g02892 727 SMART helicmild6 584 665 IPR001650 -
Adu01g02892 727 MobiDBLite consensus disorder prediction 37 170 - -
Adu01g02892 727 Coils Coil 27 57 - -
Adu01g02892 727 CDD SF2_C_DEAD 545 674 - -
Adu01g02892 727 MobiDBLite consensus disorder prediction 695 727 - -
Adu01g02892 727 CDD DEADc_DDX23 318 534 - -
Adu01g02892 727 Pfam Helicase conserved C-terminal domain 557 665 IPR001650 -
Adu01g02892 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 686 IPR027417 -
Adu01g02892 727 Coils Coil 111 155 - -
Adu01g02892 727 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 307 335 IPR014014 GO:0003724
Adu01g02892 727 Coils Coil 551 571 - -
Adu01g02892 727 MobiDBLite consensus disorder prediction 69 166 - -
Adu01g02892 727 MobiDBLite consensus disorder prediction 1 25 - -
Adu01g02892 727 Coils Coil 219 245 - -
Adu01g02892 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 704 IPR001650 -
Adu01g02892 727 PANTHER - 89 720 - -
Adu01g02892 727 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 89 720 - -
Adu01g02892 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 338 533 IPR014001 -
Adu01g02892 727 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 462 470 IPR000629 -
Adu01g02892 727 Gene3D - 538 725 IPR027417 -
Adu01g02892 727 SMART ultradead3 326 548 IPR014001 -
Adu01g02892 727 Pfam DEAD/DEAH box helicase 332 522 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02892 Adu-Chr1 99441947 99444558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02892 305 687 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.40e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02892 K12858 - gmx:100799264 1129.39