LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g02887	ATGGTGGTGGTGATAGAGCAGCGTGATACTCTAGATCGAAATGCGAATCCATTCAACACTGCCGCTTTTGATGGTTTTGAAACTGCGAGTGACACGGACCTTGGCAGTGATGCTGAAGGCGAGCATGGCAGAGCTAGCTGCTGTCAAGAACGATCAACCGCTGCCGAAGTTGCAACACCAGCATGCGGAGCTGGAGCATGGAGCATGGAGCATGGTGTTCTCCGATATGAACTTGCCCTACAAGTTGCACTTAACATGTCTTCATCGGTGGAAGTACGTTTGATCTGCCATGCAAATCGTGCTGCATGCTATCAGAAACTGGGAAAATATGACAGCACAGTTAAAGAATGCACACAAGCATTAGAACTGAACCCTGCATACATTATTAAAGCATTGGCAAGAAGAGGAGAAGCCCATGACAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAGGATCTTAGAAATTGATCCGTCAAATGATCAAGCCAGGAAGGGCTTTAGAGAGAAGGTGTATGAATCTCAGGAAAAGAGGACTATTGCAACTCTTCCGGTTACAAAGACTAAAAATAACTGTTCAAGCAGATGGAAGCTTTGTATCCTGATGCATATAAGAGTGTTCATTAATATGGTAACCGAAATTGCAAGGATGGAGTTTTTGGAGTTTATCAAGGGTTTGAGTCTTGTTGGAGGTGGTAAAACCGTAAAAGCCAAAATTAAGTCTGTCAAATCAAAAGATGAGGGTGAATCTCTTAAGTTTACTCATAAGAATCTGATTGACAAGATATGTACTGATTCTGCAAATGACTGCAGCTATATGTACTATAAGAAAGTCAAGTTAGGTTTTAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTGGGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTAGACCTGCTGCATCAAGGCAACAATTGGTTACAGATTTCCGGGAAGAGGACTCTATCAAGCCATCCATTAATGCTGGAGGAGCCGAAGATCGTGCTCATAGAATTGGCAAGGTCTCTCCGGTAAATATATATTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGCTGGTACATCTCTACATCGTCTTGGAACTATCATATGTAACATATGATGTTAGATGGCCATGA	1215	0.4247	MVVVIEQRDTLDRNANPFNTAAFDGFETASDTDLGSDAEGEHGRASCCQERSTAAEVATPACGAGAWSMEHGVLRYELALQVALNMSSSVEVRLICHANRAACYQKLGKYDSTVKECTQALELNPAYIIKALARRGEAHDKLEHFEEAIADMKRILEIDPSNDQARKGFREKVYESQEKRTIATLPVTKTKNNCSSRWKLCILMHIRVFINMVTEIARMEFLEFIKGLSLVGGGKTVKAKIKSVKSKDEGESLKFTHKNLIDKICTDSANDCSYMYYKKVKLGFKFLIFAHHQPMIDAIHECLLGKKVGCIRIDGGRPAASRQQLVTDFREEDSIKPSINAGGAEDRAHRIGKVSPVNIYYLLANDTVDDIIWDVVQFKPDNLGLVHLYIVLELSYVTYDVRWP	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g02887	404	Gene3D	-	257	343	IPR027417	-
	Adu01g02887	404	SMART	tpr_5	94	127	IPR019734	GO:0005515
	Adu01g02887	404	SMART	tpr_5	129	162	IPR019734	GO:0005515
	Adu01g02887	404	Pfam	Tetratricopeptide repeat	130	162	IPR013105	-
	Adu01g02887	404	Gene3D	Tetratricopeptide repeat domain	68	183	IPR011990	GO:0005515
	Adu01g02887	404	SUPERFAMILY	TPR-like	91	169	IPR011990	GO:0005515
	Adu01g02887	404	Pfam	Tetratricopeptide repeat	98	126	IPR019734	GO:0005515
	Adu01g02887	404	CDD	SF2_C_SNF	278	363	-	-
	Adu01g02887	404	PANTHER	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1	344	384	IPR030101	GO:0006281\|GO:0031297\|GO:0036310
	Adu01g02887	404	ProSiteProfiles	TPR repeat profile.	129	162	IPR019734	GO:0005515
	Adu01g02887	404	PANTHER	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1	235	340	IPR030101	GO:0006281\|GO:0031297\|GO:0036310
	Adu01g02887	404	Gene3D	-	344	386	IPR027417	-
	Adu01g02887	404	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	277	381	IPR027417	-
	Adu01g02887	404	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	344	384	-	-
	Adu01g02887	404	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	235	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g02887	Adu-Chr1	99370108	99377683	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g02887	75	179	Calmodulin-binding Proteins	AT3G25230	36.207	2.48e-09	57.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g02887	K14440		-	gmx:100778246	192.971