Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02880 ATGAGAGCAGTAGAAAACAACACAGGAAGCAATAATAATAATCATACAGATGATAATGAATGCACTGTGAGGGAGCAAGATCGGTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTACCACCGCACGCTAAAATCTCTGATGACGCAAAAGAAACAATACAAGAATGCGTATCAGAGTACATCAGCTTCATCACCGGAGAAGCCAACGAGCGGTGTCAGAGGGAGCAACGGAAGACCATCACGGCGGAGGACGTTCTTTGGGCAATGAGTAAGCTTGGCTTTGACGATTACATTGAGCCTCTGACGATGTACCTTCACAGGTACCGTGAGCTTGAAGGTGACCGTACCTCCATGAGAGGAGAGCCACTTGGAAAGAGGACTGTTGACTATGGAACTCTTGGTGTTGCTGCTGCTTCTACTTTTGTTCCACCGTTTCACATTGGACATCACCATCATCATCCTCATCCCAGTAGCTATTATGGTACACCCATGGGGAATTACATTAGAGATGCACCCAATGCTGGCTCGTCTCTTCAGCCTCCTTCACTTGCTCATGCTGAACCAAATACTCAATACAAATGA 594 0.4596 MRAVENNTGSNNNNHTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVDYGTLGVAAASTFVPPFHIGHHHHHPHPSSYYGTPMGNYIRDAPNAGSSLQPPSLAHAEPNTQYK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02880 197 MobiDBLite consensus disorder prediction 176 197 - -
Adu01g02880 197 Gene3D Histone, subunit A 16 131 IPR009072 GO:0046982
Adu01g02880 197 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 10 145 - -
Adu01g02880 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Adu01g02880 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Adu01g02880 197 MobiDBLite consensus disorder prediction 1 17 - -
Adu01g02880 197 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Adu01g02880 197 SUPERFAMILY Histone-fold 26 125 IPR009072 GO:0046982
Adu01g02880 197 MobiDBLite consensus disorder prediction 1 23 - -
Adu01g02880 197 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Adu01g02880 197 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Adu01g02880 197 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Adu01g02880 197 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02880 Adu-Chr1 99274978 99275571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02880 11 156 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.481 5.63e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Adu01g02880 CBFD_NFYB_HMF 5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02880 K08065 - gmx:100800011 268.855