Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02876 ATGGGCGAGTCAGATAACGAGTCAGGAGGTCAAGGAGGGAACGAGTTCTCATCATCATCAGGAGGTAGTGGACTATGCAGAGAACAGGACCGCCTTCTTCCGATTGCCAACGTCGGAAGAATCATGAAGAAGGCACTTCCGGCGAACGCCAAGATCTCAAAGGAGGCCAAAGAGACGGTGCAAGAGTGCGTTTCTGAGTTCATAAGCTTCATAACAGGGGAAGCTTCTGACAAGTGCCAGAAGGAGAAGCGGAAGACCATCAACGGTGATGATCTCTTGTGGGCCATGACTACGCTCGGATTCGAGGATTATGTGGAGCCTCTCAAGATTTATCTCCATAAATACAGGGAGATGGAAGGTGACAAGACTCCCATCGTTGGTGGCGGCAGACAGCACCACCCTGATGATCACGCCGGTGATGACGCTGCCACCGCCGGAGCCCTTTATGGTGGCGTGCCTTCTACTATGATGATGATGATGGGCGGACACGTGTATGGATCTGCCAATAATGGATCAGCATCTTCTGGAAGAACTACTAGTATGGAAGTCGCCACTGCTGCTCTTGGAGGTTACCGTGCTGTTGAGGTGGAGGTCGTCGTTGTCCGCTGTTGCGCTTGGAGGTTGCCTCGCCATCAGGATGAAGGTCGCCGTCGAGGTGAAGAAGAAAAAGAAAAAAAGAAAAAGAAACCGTAG 693 0.5166 MGESDNESGGQGGNEFSSSSGGSGLCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGDKTPIVGGGRQHHPDDHAGDDAATAGALYGGVPSTMMMMMGGHVYGSANNGSASSGRTTSMEVATAALGGYRAVEVEVVVVRCCAWRLPRHQDEGRRRGEEEKEKKKKKP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02876 230 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Adu01g02876 230 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Adu01g02876 230 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Adu01g02876 230 SUPERFAMILY Histone-fold 29 130 IPR009072 GO:0046982
Adu01g02876 230 MobiDBLite consensus disorder prediction 1 25 - -
Adu01g02876 230 MobiDBLite consensus disorder prediction 209 230 - -
Adu01g02876 230 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Adu01g02876 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Adu01g02876 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Adu01g02876 230 Gene3D Histone, subunit A 24 144 IPR009072 GO:0046982
Adu01g02876 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02876 Adu-Chr1 99135293 99137586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02876 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.953 4.20e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Adu01g02876 CBFD_NFYB_HMF 2.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02876 K08065 - gmx:100305641 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02876 01 99135293 99137586 Adu04g00523 04 6409026 6409969 PCT