Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02852 ATGCTGGTGCCGATTCGGGATAGAAGAAGAGACAGTGCAATATGGTTTCCTCAGCAACTTGGCATCTTGAACAAATTGGTGAAGTTGACTGGAATCTTCGCATCATCCGACAAGCTCGTCGTCGGTCTCCTCCAGTCTCCTATCTCGCGTGCCTTCCTCGCCCTCGTCGTCACTGGCGGCAGTAGCAGCAGCTCCCTGACCTGGACGTCGTCGCTGCTCCGTCTCTTGTCGCTGCCTCGCAATCAGTTTCGTGCCGTCATTGCGTCCGTCGACGTCGAGACAGAAGCAGCAGGTCCCCGACTTCCTCCTCGCCTTCAGCAACTCGTCGACCTCCTTCGCACAACCTGGTCCCAATCAGTAGATCGAGTAGGTGCTCTTCTCTTGGAAGCTTTTAATGCAGCAATTGTCAATGGTGGGAGGGAAGGAGGAATAATCATTCAAAGATTTCATGAAGCAATAAATTTTCCTCCTGATCCAATAATTAGAAAGAAAACGAGTCTGGGTGCAATGGATGTTGATTCGGAGCCACTCAATTCACAAGAGAACGTTGAAGATTGCTTGATGACCAGTGTGGAAGAGAATGTAAATTGCACTTGTGATTGCGGTGGCAGCAGTAGCAAGTGTGTTGTTGTGACGGCCGATGATATTATAAACCAGACATTTGAAACATCAGATGCAGCTTATAACTTGTATGTGCGTTATGCAAGGTGTGTCGGGTCCGGAGTTCGCAAGGGTGATATAGCACGTGGAAAAGATGGAACACAACGCAGAAGGCGATTTTTTTGCAACAAGGAAGGAAAGAGAGCCGATAAATACATCTCTAATTTGAACAGGAAAAGGGAGCATAAAGCACTGACTCGTACGGGTTGTGAAGCCATGCTTGCGGTGTACTTTGATGCCAAAACTTCAGCTTGGAGAGTTAAAAAATTAGTTGAGAAGcacaaccacgatcttgtcccccaatgcttgacggtgtacggagagcctgtgTTAACAACTCGCTTAGCTGCATTGGAGCTTTGTGCTGTAAATTTTTACACACGGGAGATGTTTGGCAAAGTAAAAACAGAAATTGAAGGAGTGGCTGCATTAGATGTTATAAATGAGGAAAATATATCAACTACTGTTGTTTTAAAAGTTAAGGAGTATGACAGAGGGCAACATATATACACCGTACTTTATGAGCGCAACACCGAGAATATGGAGTGTGAATGTAGTAGGTGGAGTAGTGAAGGCATTCCCTGTAGCCACATGTTTTGTGCCATGAAAAGGCTAGGTTTACAGAAGTTGCCAGAAAGTCTTCTTTTGAGAAGATGGTCCAAGGATGCCAAAAAGTATCCGGATGAAAGTTCAGCTGGAAGCACTGTGCAAGATGGAGAAAGAGATTTTTTAATGCGCTATGGCGCATTGTCAGTGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTTTCTCGTTTGACCAAAATACTAGAGCAAAAGTCGTGCTTGAAAAGAGGAACAAGAGATTCTCCCATGCCGAACTTTGTTGGTGACCCTTCAGTTGTCAAGACAAAAGGTGCACCAAAGGGAAAAAAAGAGAGTAGAAAACGGAGGTGCACTAAATGCAACAATGCTGGTCATGTAAAGAAGAATTGTCCTGTGAAGAATGAGGGTGACAATTTGGGTGATAAGATTAGTGGTGGCACACAGGCTAGCTTTGGTGTAGAAGAGGAGCTTCCCAAAGACCCTATGGCTTCTCAAGGGACGCAAGCTAACAATGATGATTTTCAGCAAAAATAA 1815 0.4364 MLVPIRDRRRDSAIWFPQQLGILNKLVKLTGIFASSDKLVVGLLQSPISRAFLALVVTGGSSSSSLTWTSSLLRLLSLPRNQFRAVIASVDVETEAAGPRLPPRLQQLVDLLRTTWSQSVDRVGALLLEAFNAAIVNGGREGGIIIQRFHEAINFPPDPIIRKKTSLGAMDVDSEPLNSQENVEDCLMTSVEENVNCTCDCGGSSSKCVVVTADDIINQTFETSDAAYNLYVRYARCVGSGVRKGDIARGKDGTQRRRRFFCNKEGKRADKYISNLNRKREHKALTRTGCEAMLAVYFDAKTSAWRVKKLVEKHNHDLVPQCLTVYGEPVLTTRLAALELCAVNFYTREMFGKVKTEIEGVAALDVINEENISTTVVLKVKEYDRGQHIYTVLYERNTENMECECSRWSSEGIPCSHMFCAMKRLGLQKLPESLLLRRWSKDAKKYPDESSAGSTVQDGERDFLMRYGALSVAATWMVFLGAQDGPSFHDTMNEVSRLTKILEQKSCLKRGTRDSPMPNFVGDPSVVKTKGAPKGKKESRKRRCTKCNNAGHVKKNCPVKNEGDNLGDKISGGTQASFGVEEELPKDPMASQGTQANNDDFQQK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02852 604 MobiDBLite consensus disorder prediction 512 604 - -
Adu01g02852 604 Pfam FAR1 DNA-binding domain 230 320 IPR004330 -
Adu01g02852 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 218 321 IPR031052 GO:0006355
Adu01g02852 604 MobiDBLite consensus disorder prediction 590 604 - -
Adu01g02852 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 337 447 IPR031052 GO:0006355
Adu01g02852 604 SUPERFAMILY Retrovirus zinc finger-like domains 534 562 IPR036875 GO:0003676|GO:0008270
Adu01g02852 604 MobiDBLite consensus disorder prediction 534 549 - -
Adu01g02852 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 218 321 - -
Adu01g02852 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 337 447 - -
Adu01g02852 604 SMART 26again6 401 428 IPR006564 GO:0008270
Adu01g02852 604 ProSiteProfiles Zinc finger SWIM-type profile. 390 426 IPR007527 GO:0008270
Adu01g02852 604 ProSiteProfiles Zinc finger CCHC-type profile. 542 558 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02852 Adu-Chr1 98852440 98858990 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu01g02852 FAR1 7.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02852 - - ahf:112805425 541.576