Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02847 ATGTCTTTCATCCGTAACCACGGCGGAGTCTTCCACGGTGGCCCCACCACGGATCACCACCTTCCATCAAAACGCAAACTTGAAGACTCCGGCTCCCTCATCGATGACAGCAGCGACAGCAACGATTTGATGAGCGACTTAGTGTCGGTCAGAATGAGAAAAGACGAAGGAGGAGCAGTGAATTCATGGTCTCCAATTAAAACCCCTCTAAGCCCTCTTTCGGAGACCCAGTCCCAAAGGAGTTTATCTATTTGGCCACACTTGCAGTTCTTCGTTCGGATGATGTCTGAGGGCAACACCATGGTCATGCACGCTTTTCCGGAAGACAGCGTCAAATCCATCCACCAGCGAATTCAGCACATCAAGGGAATTCCTATCCATGAACAGAGACTGATCTATATGGGAAAGCAGCTTCAATTTGAGCAGACTCTTGCAGAGTGTTCCATTCAAAATGATGCCAGCCTCCAGTTAGTTGGTCGGATGCGCAGCACGGAGCACCCGCAAGCCTGGCAGGTCATGAACGACATGATTTCCGTTGTGTATAGAATGTGCAGAGGGGAATCTCTCCCTAATGCACTCAAGACCGTAAAGGGCCTCATTGACAGTTACCTGAACATGACCCCTAGAGACTCTGACTCTGCTTTGGGCTACTTCCAGATTTTCATGTCTTGTTCGGCACCCGCTGTTTTGGTCATGCTCTACCTTTCTCCCTTTACAGGTAATAAGGACTGTGCTGACTCTTCTGTTAGGCATTTTGTGAATTCTTGTCGTAGTACATTGTCTGAGGAATTGCATAGCCAGTTTGCGCTTGTGGTGTTGGAGTTTTGCAAATTGCTTAGGAGGCTGCACTGTGATGATCCTTTGTATATGTTTTGCCGGAGTACTTTGGGGTCCTTGTTGGAAACTGATTGTGTGTGCTGTGGTACTACTGAGGAGGATGTTAAAGGGTTGATTTTGGTTCAAGATATATTCCCATTTGTCCGTGAGCTTGCCAATAGCTTGTTGAGTGATTTGGATTTGAGTTTGGAATCCCCAACCTATGCTGGACACTTGTACAGCGATGTTAGAGATCTTAGGGCATTCTTGGTCCCTTTGAGATCTGGAATCAGTGTGCAACAATCGCTCATGGTTTCTGCAACGGATGAGGAGCGCCACACCGATGCCATGCTCACAGAAGAGATTGAAAACCTTCATTTTTTATACATTGAGTTGCTGAGCAAGATGGACGAATGCCTTAAAAAAGTGGATAGCAGCTTAGCAGACCAGGAGATAACAGAATGGGATACTCCTTATAATGCGTGGTCTCAGTATCTTTCTATTTTGAAGGAATTACATCAAATCTCTAAGCTTTATGATGGTGCTGAAGAGGAACTTTGGAATGTTTTAACACGTCAAAGAAGTGCAGTGTGTCAACTGATTGTTAGGTATGCAAAGAGGAATGATGAACATCATTGGATTCTTGAACGCAAGTGTGTGACGAATTTTGAATCAAGAAGGCATTTGGCGCTGCTGATGCTGCCAGAGGTAAAAGATGACTATGAGGAGTTGCATGAGATGCTCATTGATAGGTCTCAGTTATTGGCTGAATCTTTCGAATACATAGGACGTGTGGAACCAGAATCTCTACGGGGGGGCCTATTTATGGAATTCAAAAATGAGGAAGCTACTGGGCCGGGCGTACTGAGGGAGTGGTTTTTTCTGGTATGTCAAGAAATATTCAATCCGCAAAATGCTCTTTTTGTCGCATGCCCAAATGACAAACGAAGATTTTTCCCCAATCCTGCATCTAAAGTAGATCCTCTGCACCTTGAATATTTCCGCTTCTCTGGTCGAGTTATTGCATTGGCTTTGATGCATAGGGTGCATGTTGGTGTAGTTCTTGACCGTGTGTTTTTCCAGCAATTAGCCGGAAATGAAATTACTTTAGAAGATATAAGGGATGCAGATCCACACTTGTATAGTAGCTACAAGCAAATATTGGAGATGGATCCTGGTTTCATTGATTCAGATTCATTAGGACTGACATTTGTTAGAGAGGTGGAACAGTTAGGACACAGGGAAGTGGTTGAGCTGTGTCCCGGTGGGAAGAACATCGTTGTACATAGTAAGAACAGGGAAAATTATGTTGATCTTCTTATACAGGATCATTTTGTAACATCTATATCTGAGCAGGTGTCACAATTTGCCAAAGGCTTTGGTGATATTCTCTCAAACTCAAGCCTCGAGTCATCATTCTTTCAAAGTTTAGACCTTAAAGATCTTGACTGGATGCTGCATGGGAGTGAAGATATCATTTCTGTTGAGGACTGGAAAGCACATACTGAGTATCAAGGCTATGAAGAGACAGATCCTCAGATATCTTGGTTTTGGGAGATTCTTGGGAGGATGACAGGTGAAAAGAGAAGGGTACTTCTGTTCTTCTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCCCTGGTTTGGCTTCGAGTCTCTCCATTTACAGGTCCCCTGAACATGAGGATCACCTTCCGACATCTCACACATGTTTTTACCGGCTGTGCCTACCAGCCTATTCATCGAGGGCCATCATGCAAGATCGTCTAAAAGTTCTCACTCAAGACCACATTGGCTGCAGTTTTGGTACTTGGTGA 2637 0.4456 MSFIRNHGGVFHGGPTTDHHLPSKRKLEDSGSLIDDSSDSNDLMSDLVSVRMRKDEGGAVNSWSPIKTPLSPLSETQSQRSLSIWPHLQFFVRMMSEGNTMVMHAFPEDSVKSIHQRIQHIKGIPIHEQRLIYMGKQLQFEQTLAECSIQNDASLQLVGRMRSTEHPQAWQVMNDMISVVYRMCRGESLPNALKTVKGLIDSYLNMTPRDSDSALGYFQIFMSCSAPAVLVMLYLSPFTGNKDCADSSVRHFVNSCRSTLSEELHSQFALVVLEFCKLLRRLHCDDPLYMFCRSTLGSLLETDCVCCGTTEEDVKGLILVQDIFPFVRELANSLLSDLDLSLESPTYAGHLYSDVRDLRAFLVPLRSGISVQQSLMVSATDEERHTDAMLTEEIENLHFLYIELLSKMDECLKKVDSSLADQEITEWDTPYNAWSQYLSILKELHQISKLYDGAEEELWNVLTRQRSAVCQLIVRYAKRNDEHHWILERKCVTNFESRRHLALLMLPEVKDDYEELHEMLIDRSQLLAESFEYIGRVEPESLRGGLFMEFKNEEATGPGVLREWFFLVCQEIFNPQNALFVACPNDKRRFFPNPASKVDPLHLEYFRFSGRVIALALMHRVHVGVVLDRVFFQQLAGNEITLEDIRDADPHLYSSYKQILEMDPGFIDSDSLGLTFVREVEQLGHREVVELCPGGKNIVVHSKNRENYVDLLIQDHFVTSISEQVSQFAKGFGDILSNSSLESSFFQSLDLKDLDWMLHGSEDIISVEDWKAHTEYQGYEETDPQISWFWEILGRMTGEKRRVLLFFWTSVKYLPVEGFPGLASSLSIYRSPEHEDHLPTSHTCFYRLCLPAYSSRAIMQDRLKVLTQDHIGCSFGTW 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02847 878 MobiDBLite consensus disorder prediction 18 33 - -
Adu01g02847 878 ProSiteProfiles HECT domain profile. 538 878 IPR000569 GO:0004842
Adu01g02847 878 Gene3D Hect, E3 ligase catalytic domain 638 720 - -
Adu01g02847 878 Gene3D - 86 179 - -
Adu01g02847 878 MobiDBLite consensus disorder prediction 1 38 - -
Adu01g02847 878 Pfam Ubiquitin family 91 162 IPR000626 GO:0005515
Adu01g02847 878 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 83 876 - -
Adu01g02847 878 SUPERFAMILY Hect, E3 ligase catalytic domain 515 864 IPR035983 GO:0004842
Adu01g02847 878 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 83 876 - -
Adu01g02847 878 PRINTS Ubiquitin signature 99 119 IPR019956 -
Adu01g02847 878 PRINTS Ubiquitin signature 120 140 IPR019956 -
Adu01g02847 878 PRINTS Ubiquitin signature 141 162 IPR019956 -
Adu01g02847 878 ProSiteProfiles Ubiquitin domain profile. 88 164 IPR000626 GO:0005515
Adu01g02847 878 SUPERFAMILY Ubiquitin-like 76 163 IPR029071 -
Adu01g02847 878 Gene3D Hect, E3 ligase catalytic domain 761 876 - -
Adu01g02847 878 SMART hect_3 536 876 IPR000569 GO:0004842
Adu01g02847 878 CDD HECTc 517 876 IPR000569 GO:0004842
Adu01g02847 878 SMART ubq_7 88 160 IPR000626 GO:0005515
Adu01g02847 878 Gene3D Hect, E3 ligase catalytic domains 520 748 - -
Adu01g02847 878 Pfam HECT-domain (ubiquitin-transferase) 567 865 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02847 Adu-Chr1 98781950 98786817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02847 88 162 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 6.94e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02847 - - gmx:100789233 1248.03