Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02826 ATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCTTCCTCTTCATCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCTGAGGACGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGAGCGGGAGCTGAAGGGTCAGCTGTTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCCCACACAATGCTTTGA 819 0.4603 MDIHNNHHGSSSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02826 272 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Adu01g02826 272 Pfam KNOX2 domain 68 114 IPR005541 GO:0003677|GO:0005634
Adu01g02826 272 CDD homeodomain 186 238 IPR001356 GO:0003677
Adu01g02826 272 PANTHER - 14 261 - -
Adu01g02826 272 SMART ELK_2 154 175 IPR005539 GO:0003677
Adu01g02826 272 SMART HOX_1 176 241 IPR001356 GO:0003677
Adu01g02826 272 Pfam ELK domain 154 175 IPR005539 GO:0003677
Adu01g02826 272 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Adu01g02826 272 SUPERFAMILY Homeodomain-like 176 251 IPR009057 -
Adu01g02826 272 ProSiteProfiles ELK domain profile. 154 174 IPR005539 GO:0003677
Adu01g02826 272 Gene3D - 179 241 - -
Adu01g02826 272 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 14 261 - -
Adu01g02826 272 SMART KNOX2_2 65 116 IPR005541 GO:0003677|GO:0005634
Adu01g02826 272 ProSiteProfiles 'Homeobox' domain profile. 174 237 IPR001356 GO:0003677
Adu01g02826 272 Pfam KNOX1 domain 19 58 IPR005540 GO:0003677|GO:0005634
Adu01g02826 272 Pfam Homeobox KN domain 194 233 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02826 Adu-Chr1 98435093 98438514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02826 20 272 Homeobox Transcription Factor Family AT1G62360 79.848 1.24e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Adu01g02826 KNOX2 1.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02826 - - gmx:547796 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02826 01 98435093 98438514 Adu04g00425 04 5072768 5077166 PCT