Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02786 ATGATGCAGCCCGGACCTGGCATGGCTCCTCCACCCAACATGGCCCAGCAGCCCAACCAGCAGTACCAGCAGCAGCAGCCATACATGATGATGCCTCCGCAGGCCCAGCCACCACAGATGTGGGCCCCCTCCCCTCAGGCTCCGACACAGTCCGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGTGCCGATGAGGTCCGAACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTACCTCTACACCTGTTTTGCTCACACTGGCGAGATGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAAACATTCAATGGTACCATTATGCCAAATGGCGGGCAGAATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGTGAGAGGCGTCATGACGACAGTCCAGATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTTCAGGAGACATTTAGGGGTAGATACTCCTCGGTTAAGGGGGCTAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTACGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAGTTAGAGCTATGACAGAAATGCAGGGCGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCATCTAATAAAAACCCAACCACACAATCCAACAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATGCAAATGTTACAGATGATCACCTGCGACAAGTCTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCCGGCAAGAGATGTGGATTTGTGCAATTTGCCGACAGGAGTTGTGCTGAAGAGGCACTGAGAGTTTTGAATGGAACACTTTTAGGTGGCCAAAATGTTAGGCTTTCATGGGGACGGAGTCCTTCAAACAAACAGACTCAGGCAGACCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCACAGGGCTATGAAAATTATGGTTATGCTCCCGCCGGGCAGGACCCCAACATGTATGGAAGCTATCCGGGGTATGCAAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1203 0.4855 MMQPGPGMAPPPNMAQQPNQQYQQQQPYMMMPPQAQPPQMWAPSPQAPTQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMASVKVIRNKQTSQSEGYGFIEFTSRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPTTQSNKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFGHYGELVHVKIPSGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02786 400 CDD RRM2_SECp43_like 159 238 - -
Adu01g02786 400 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 396 - -
Adu01g02786 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Adu01g02786 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Adu01g02786 400 SMART rrm1_1 68 143 IPR000504 GO:0003723
Adu01g02786 400 SMART rrm1_1 161 235 IPR000504 GO:0003723
Adu01g02786 400 SUPERFAMILY RNA-binding domain, RBD 28 148 IPR035979 GO:0003676
Adu01g02786 400 MobiDBLite consensus disorder prediction 234 267 - -
Adu01g02786 400 MobiDBLite consensus disorder prediction 1 60 - -
Adu01g02786 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Adu01g02786 400 Gene3D - 10 151 IPR012677 -
Adu01g02786 400 MobiDBLite consensus disorder prediction 31 55 - -
Adu01g02786 400 Gene3D - 246 347 IPR012677 -
Adu01g02786 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 396 - -
Adu01g02786 400 MobiDBLite consensus disorder prediction 14 30 - -
Adu01g02786 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Adu01g02786 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Adu01g02786 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Adu01g02786 400 SUPERFAMILY RNA-binding domain, RBD 251 362 IPR035979 GO:0003676
Adu01g02786 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Adu01g02786 400 MobiDBLite consensus disorder prediction 230 267 - -
Adu01g02786 400 MobiDBLite consensus disorder prediction 385 400 - -
Adu01g02786 400 CDD RRM1_SECp43_like 68 148 - -
Adu01g02786 400 MobiDBLite consensus disorder prediction 379 400 - -
Adu01g02786 400 Gene3D - 152 245 IPR012677 -
Adu01g02786 400 SUPERFAMILY RNA-binding domain, RBD 152 252 IPR035979 GO:0003676
Adu01g02786 400 CDD RRM3_NGR1_NAM8_like 265 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02786 Adu-Chr1 97983527 97987417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02786 68 345 Eukaryotic Initiation Factors Gene Family AT4G34110 27.817 3.85e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02786 - - gmx:100814743 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02786 01 97983527 97987417 Adu04g00374 04 4342490 4346502 PCT