Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02678 ATGGGGAGGCCCTCCAAATCTCAGCCTTCTTCCGACGATGAAGCGCCGTCGAATGCCTCTGACTCCGATTCCGATTCCGGTTCGGAGGAGCAACTTCCCAACGATCAGATCAACGAACAAGAAGACGACGAGGAGCTCGAAGAGGTGGCTCGCTCCGCTAGCTCTGGCGATGACGATACTGCGCCGGATGAACCTGCAGGAGACGCCGACGACGATGAACAGGTAAACGACGAAAATAATGCTGACACTGAAGTTAGCAAGCGCGAGAAGGCGAGGTTGAAAGAAATGCAGAAATTGAAGAAGCAGAAGATTCAGGAGATTTTGGATGAACAAAATGCAGCTATTGATGCTGATATGAATAATAAAGGAAAGGGCCGATTGAAGTATCTGTTGCAGCAAACTGAGATTTTTGCTCATTTTGCCAAAGGTGCTCAATCTTCTTCTCAGAAGAAGTCAAAGGGAAGGGGACGCCATGCATCGAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGTTTGGCAAGCACGCGGCTGGTAACACAGCCATCATGTATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGGTTAAACTGGCTCATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGACTTGGGAAAACATTACAAACTATATCTTTGCTAGGGTATTTATATGAGTTCAGAGGTATAAAGGGTCCTCATATGGTTGTTGCCCCAAAGTCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTACGAGCAATAAAGTTCCTTGGCAACCCGGATGAAAGGAGGCATATACGAGAGGAGTTATTGGTTGCCGGGAAGTTTGATGTATGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAGTCTGCATTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCACAGAATCAAGAATGAGAACTCCCTCCTTTCCAAGACGATGAGGCTCTATAATACAAACTACCGACTCCTTATAACTGGCACACCACTCCAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAAATAAAGTCCTTCGCCCATTTCTCCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACTATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCATTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAGCGACTCCTCAACATAGCAATGCAATTGCGTAAATGTTGTAATCACCCGTATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACTACAGGAGACCATCTCGTCACAAATGCTGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCCCGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTTTCGGGGATATCAATATTGTCGTATAGATGGAAACACCGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTAATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACGGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGCCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGACGCCATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGACAAGGATGAGAACAAATTTGATTTCAAAAAGATTCAAACCTTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGTATTCCCAGGATGCCTCAACTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAAGTAAAAGACTCCATAGAGGTGGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGTTTCTCATCATGGAGCAGGAGGGATTTTAATACTTTTGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGAGGAAGTTGAGAGATATGCGGTGGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAAGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAACTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCACCTTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGCACAACGCAAGAACTAACAAGGAGGTGCGACACCCTCATTCGCCTTGTTGAGAAGGAAAACCAAGAATATGACGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAACTTGCAAAGAGTAGTACCCCATCAAAGCGTACCATGCCACGACAGACGGAGTCTCCATCTTCGAAGAAGCGCAAGCAGCTGACCATGGATAACTTTGTAAGCTCGGGGAAGAAGAAAAAATAA 3108 0.4254 MGRPSKSQPSSDDEAPSNASDSDSDSGSEEQLPNDQINEQEDDEELEEVARSASSGDDDTAPDEPAGDADDDEQVNDENNADTEVSKREKARLKEMQKLKKQKIQEILDEQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGAQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYAVVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRTMPRQTESPSSKKRKQLTMDNFVSSGKKKK 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02678 1035 Gene3D - 812 866 - -
Adu01g02678 1035 SUPERFAMILY Homeodomain-like 815 865 IPR009057 -
Adu01g02678 1035 MobiDBLite consensus disorder prediction 982 1035 - -
Adu01g02678 1035 SUPERFAMILY Homeodomain-like 867 989 IPR009057 -
Adu01g02678 1035 Gene3D - 900 1003 - -
Adu01g02678 1035 SMART sant 812 861 IPR001005 -
Adu01g02678 1035 SMART sant 914 975 IPR001005 -
Adu01g02678 1035 Gene3D iswi atpase 867 899 - -
Adu01g02678 1035 Gene3D - 406 698 IPR027417 -
Adu01g02678 1035 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Adu01g02678 1035 MobiDBLite consensus disorder prediction 80 99 - -
Adu01g02678 1035 Pfam SLIDE 869 979 IPR015195 GO:0003677|GO:0005634|GO:0006338
Adu01g02678 1035 MobiDBLite consensus disorder prediction 61 79 - -
Adu01g02678 1035 CDD DEXHc_SMARCA1_SMARCA5 192 402 IPR044754 GO:0005524
Adu01g02678 1035 Pfam SNF2-related domain 208 465 IPR000330 GO:0005524|GO:0140658
Adu01g02678 1035 MobiDBLite consensus disorder prediction 1 99 - -
Adu01g02678 1035 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Adu01g02678 1035 PANTHER SNF2/RAD54 HELICASE FAMILY 729 1035 - -
Adu01g02678 1035 Pfam Helicase conserved C-terminal domain 488 600 IPR001650 -
Adu01g02678 1035 Gene3D ISWI, HAND domain 725 811 IPR036306 GO:0003677|GO:0006338|GO:0031491
Adu01g02678 1035 PANTHER SNF2/RAD54 HELICASE FAMILY 17 728 - -
Adu01g02678 1035 MobiDBLite consensus disorder prediction 142 177 - -
Adu01g02678 1035 CDD SF2_C_SNF 486 611 - -
Adu01g02678 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 683 IPR027417 -
Adu01g02678 1035 SMART helicmild6 516 600 IPR001650 -
Adu01g02678 1035 MobiDBLite consensus disorder prediction 982 1000 - -
Adu01g02678 1035 Coils Coil 86 113 - -
Adu01g02678 1035 Coils Coil 962 996 - -
Adu01g02678 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 400 IPR027417 -
Adu01g02678 1035 Gene3D - 160 395 IPR038718 -
Adu01g02678 1035 ProSiteProfiles SANT domain profile. 811 863 IPR017884 -
Adu01g02678 1035 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 729 1035 - -
Adu01g02678 1035 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 17 728 - -
Adu01g02678 1035 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 729 814 IPR036306 GO:0003677|GO:0006338|GO:0031491
Adu01g02678 1035 SMART ultradead3 191 383 IPR014001 -
Adu01g02678 1035 MobiDBLite consensus disorder prediction 1 34 - -
Adu01g02678 1035 CDD SANT 815 859 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02678 Adu-Chr1 96217422 96224541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02678 216 627 RAD5 or RAD16-like Gene Family AT1G02670 27.490 1.03e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu01g02678 SNF2_N 3.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02678 K11654 - gmx:100791510 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02678 01 96217422 96224541 Adu01g02678 01 96217422 96224541 ECH
Adu01g02678 01 96217422 96224541 Adu10g00004 10 100180 108664 PCT