Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02669 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGCCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTACCCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGTGCGTATTACTTTATATTTTATTTCACAAAATTATATCTCTATGAATTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCGGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACACCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGAAATGTGGCCCTTAGTCCTGTGGGTCTCCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCATATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAGCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGTGCTGCATCTCACACCTCAAGCTAA 1464 0.5123 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGATESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGASCKYNHPRQAAGTPTLVSLNYYGYPLRVVRITLYFISQNYISMNFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQASAQSSSSSATASSAATSSAASHTSS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02669 487 MobiDBLite consensus disorder prediction 405 487 - -
Adu01g02669 487 PANTHER PROTEIN PHOSPHATASE RELATED 1 472 - -
Adu01g02669 487 Gene3D - 304 390 - -
Adu01g02669 487 Gene3D - 45 122 - -
Adu01g02669 487 MobiDBLite consensus disorder prediction 1 25 - -
Adu01g02669 487 MobiDBLite consensus disorder prediction 277 303 - -
Adu01g02669 487 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Adu01g02669 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Adu01g02669 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 332 IPR000571 GO:0046872
Adu01g02669 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 379 IPR000571 GO:0046872
Adu01g02669 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Adu01g02669 487 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Adu01g02669 487 SUPERFAMILY CCCH zinc finger 309 333 IPR036855 GO:0046872
Adu01g02669 487 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Adu01g02669 487 ProSiteProfiles Zinc finger C3H1-type profile. 306 334 IPR000571 GO:0046872
Adu01g02669 487 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Adu01g02669 487 SUPERFAMILY CCCH zinc finger 356 382 IPR036855 GO:0046872
Adu01g02669 487 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Adu01g02669 487 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 472 - -
Adu01g02669 487 SMART c3hfinal6 306 333 IPR000571 GO:0046872
Adu01g02669 487 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Adu01g02669 487 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Adu01g02669 487 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Adu01g02669 487 MobiDBLite consensus disorder prediction 277 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02669 Adu-Chr1 96109555 96113224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02669 1 454 C2H2 Transcription Factor Family AT5G18550 53.004 2.21e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g02669 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02669 - - gmx:100789405 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02669 01 96109555 96113224 Adu10g00012 10 284421 289873 PCT