Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02663 ATGACCACAAGGAGTCCCAACTTCCTGCTTCGAAGCCTTAACCATATAGTATCCTTCTACGAATTGGTAAGGAGGTTCTCTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGGCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCTTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTCACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCATTTCGCATTAGACCGATGCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTAATGAAGAAGAATGCTAGCATAATCACACCGTTTTCTTTGACTGAGGAGCTGTTCCTCAAGAGGTGTATCACATGTTTTGAGGAGAAAGATAGACTTCAGTCAACTCTGATTAATTTCAAGGTGAGTGTTGTGAGTGTGTGCCCTGTGACTCCATATCAAGGTTTGCTCTTTCTCTCATGCTCCCAATCCACAATTGCATCAACCTTCCCCGATTTCTATTTTGTACCAAATGGAATTGCATTGAGCAATTGCCGTCACCATTTGTTCTTTGCAGCTTTTGTTTCAAATCCACAGCTTGCCATCTTCATCTTCATGTCGACGAGTGAGGGGAAGATCATCGACCTGGAGCAGGGATGGGACTTCATGCAGAAGGGCATCACCAAGCTCAAGAATATTCTAGAAGGCTTGCCTGAACCTCACTTCAGCTCCGAGGACAACATCATGCTTTACACAACCATCTATACCATGTGCACCCAAAAGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACAGTTCTTCCATCTTTGAGAGGAAAGAAAGATGACATTCTGTTGAGAGAACTGCTCACAAGATGGTCCAATCACAAAACTTTGACTTACTGGCTCTTAAGATTCTTTCATTATCTTGACAGATACTATCTCCCCAGATTTGGGCACCCTTCTACTGAAGAAACAAGTTTGTTGTCTTTCTATGACTTGGTAATAATATATGATTTTCTCATGttatatataaagtttaattttgatgcattaataATTCATGAGGAAAGTGCAGGAGAGAAGGTGGATTGGAAATTGATTAACAGCATTGTGGCTATCCACCCAGAGATTGGAGATAGATCAACCAAAAACCATGCACAAGGCTTTGTAGAAAGACTTGTTAAAGACAATGTTGCATTCTATTCTGATGTAGCTTCAAATTGGATAGCAAGCTCTTCCTTTAAGTTTAAGGATCACACACCAAAGGAAGAGAAATTACATGAGAATCCAATAGTTTCATCAAAGAGAATAAAAATGGTGAGTTCTGATGGAGATGTGTTTGAAGTGGACTATAAAGTTGCAGTTATGTCACAAACAATTGAAGATGTCATCAAGGCTAATCCTGCTGCTGCTAGTGATGAAATTTCAATTTCTTTAGTGAATAGCAGAACACTGAAGAAGGTGATTGAATATTGCAAGAAGCACACTACTGAATCTGAATCTGAATCTGAATCTTCTTCCAAGTGGGATGATGAATTCTTGAAGGTTGACCAACCAGAAAAACTGTTTGACCTGGTTTTGGCTTCAAACTACTTAGACATCAAGAGTCTTCTGGATCTCACAACCAATAAAATAGGGGAGATGATAAAAGGCAAGAGTCCAAGTGAAATCCGCAAGATCTTCAACATTAAGCAAGAACTAACCCCTCAAGAGGAACAAGAGATAAAGAACGAGCACGCCCAAGCATTCCAATATTAA 2094 0.4054 MTTRSPNFLLRSLNHIVSFYELVRRFSPSDLKAIAYLTGCPSSIADVRVAQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSAFRIRPMLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEELFLKRCITCFEEKDRLQSTLINFKVSVVSVCPVTPYQGLLFLSCSQSTIASTFPDFYFVPNGIALSNCRHHLFFAAFVSNPQLAIFIFMSTSEGKIIDLEQGWDFMQKGITKLKNILEGLPEPHFSSEDNIMLYTTIYTMCTQKPPHDYSQQLYDKYKEVFEEYIQSTVLPSLRGKKDDILLRELLTRWSNHKTLTYWLLRFFHYLDRYYLPRFGHPSTEETSLLSFYDLVIIYDFLMLYIKFNFDALIIHEESAGEKVDWKLINSIVAIHPEIGDRSTKNHAQGFVERLVKDNVAFYSDVASNWIASSSFKFKDHTPKEEKLHENPIVSSKRIKMVSSDGDVFEVDYKVAVMSQTIEDVIKANPAAASDEISISLVNSRTLKKVIEYCKKHTTESESESESSSKWDDEFLKVDQPEKLFDLVLASNYLDIKSLLDLTTNKIGEMIKGKSPSEIRKIFNIKQELTPQEEQEIKNEHAQAFQY 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02663 697 Gene3D Transcription termination factor 3, mitochondrial 1 228 IPR038538 -
Adu01g02663 697 Pfam Cullin family 329 526 IPR001373 GO:0006511|GO:0031625
Adu01g02663 697 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 2 231 - -
Adu01g02663 697 CDD BTB_POZ_SKP1 548 661 - -
Adu01g02663 697 SMART mt_12 67 95 IPR003690 GO:0003690|GO:0006355
Adu01g02663 697 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Adu01g02663 697 SMART mt_12 166 200 IPR003690 GO:0003690|GO:0006355
Adu01g02663 697 Gene3D Cullin Repeats 309 444 - -
Adu01g02663 697 PANTHER CGI-12 PROTEIN-RELATED 2 231 IPR003690 GO:0003690|GO:0006355
Adu01g02663 697 SMART skp1_3 546 646 IPR001232 GO:0006511
Adu01g02663 697 SUPERFAMILY Cullin repeat-like 312 526 IPR016159 -
Adu01g02663 697 Gene3D Potassium Channel Kv1.1; Chain A 543 696 IPR011333 -
Adu01g02663 697 Pfam Skp1 family, dimerisation domain 647 694 IPR016072 GO:0006511
Adu01g02663 697 Pfam Skp1 family, tetramerisation domain 548 608 IPR016073 GO:0006511
Adu01g02663 697 Pfam mTERF 46 217 IPR003690 GO:0003690|GO:0006355
Adu01g02663 697 SUPERFAMILY POZ domain 548 609 IPR011333 -
Adu01g02663 697 SUPERFAMILY Skp1 dimerisation domain-like 619 692 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02663 Adu-Chr1 95987714 96022313 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Adu01g02663 Cullin 5.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02663 K03347 - ahf:112704153 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02663 01 95987714 96022313 Adu01g02663 01 95987714 96022313 ECH
Adu01g02663 01 95987714 96022313 Adu04g01027 04 18496347 18499123 PCT