Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02600 ATGAATCTCAGCAACGGAAGGGGATCCATGTCGACGGTTACTTCAGGTGCTGCTGTGAAATCCGCCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTGCGGGTCCTTGTTGTGGACGATGATCCCACGTGTCTCATGATTCTCGAGAAGATGCTCCGAACTTGTCTTTACGAAGTTACCAAATGCAATACAGCAGAGAAAGCACTCACACTTCTGCGAAAGAATAAAAATGGGTTTGACATTGTTATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAACTGTTAGAACACATTGGCTTGGAAATGGACCTCCCTGTTATCATGATGTCTGCAGATGATGGTAAAAACGTTGTTATGAAGGGTGTAACACACGGTGCCTGCGATTACTTAATTAAACCGGTTCGCATAGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGCAAGAGAAAGAATGAATGGAGAGATACTGAGCAGTCGGGTAGTGCCGAAGAAGGAGACCGACAGCAGAAGGCATCGGATGACGCGGATTACTCGTCGTCGGCAAATGAAAGCAACTGGAGAAACTCGAAGAAGAGGAGGGATGAGGAAGAGGAAGCAGAGGAAAGAGATGACACTTCAACTTTAAAGAAGCCAAGAGTTGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTAGCTGCTGTAGATCAACTGGGAATTGATAAGGCTGTACCCAAAAAGATTCTTGAATTGATGAATGTTCCTGGACTCACCAGAGAAAATGTAGCCAGCCACCTTCAGAAATATCGTTTGTACCTCCGAAGGTTGAGTGGGGTTTCTCAGCATCAGAATAACATGAACAGTTCCTTCATGAATCCTCAAGATGCAACATTTGGGACAATTTCTTCGATTAACGGAATTGATCTTCAAACTCTTGCAGCTGCTGGCCAACTTCCAGCACAAAGTCTAGCCACACTTCAAGCAGCCGGACTTGGTAGGTCAGCTCCGAAGGGGGGCTTACCCATGCCCATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAATCCAAGGTTAAGATTCACTGAAGGGCAACAACAACAACAACATTTGAGTAATAGTAAACCAGTGAACTTACTTCACGGAATCCCAACAAATATGGAACCAAAGCAGCTTGCCAGTTTGCACCAATCATCCCAACCCCTTGGCAACATGACCGTCCGAGTCAATGCTTCTACACAGAGCAATCCCTTGTTAATGCAGATGGCACAATCCCAACCCAGAGGACACATGCTAAGTGAAAATACTGGTCCTCACCTTCCCAGACTCCCATCATCTTTGGGGCAGCCTAGTGCATCAAATGGAACTTCTAATGCTCTTATGGGCAGGAATGGGATTGCGGGTAGTACCAGAGCACCTGGCTACAATCCTATTTCACAAAGCTCTTCAATGATGAATTTTCCCATCAATCAAACCACTGAAATGCCCATCAGCAGTTTCCCTCTTGGAAGCACTCCTGGTATATCCAGTATCACAACAAAAGGCTCGTTTCAAGAAGAAGTTACTTCTGGAATTAAACGGGCAGGCGGGTTTGTTCCAAATTATGACATTTTTAGTGAACTGCAAAAGCCACATGATTGGGAGGTATCGAATCCAAGCCTTACGTATAATGCTGCCTCTCAGCATGCAAATCCTTTACATGGTAACATTGATGTCTCGCCTTCAGTTTTAGTGCAGCAGAGCTTTTCTTCTAACCAACAGACGGGACAAAGCAGAGATGCCAATACCATGATTGTAAAGCCTATATTCTCTGCGAGTGAAAGCATGGAGCAAGGCACTCTCCAAAATCAACACCTCAATACACTCGTCACTGACAACTCAATAAGGGTTAAGACCGAAAGAATCCCTGATGCAAGCTCCCAAACTAACTTCTATCCTGAGCATTATGGGCAGGAGGATCTCATGAGTGCACTTCTCAAACAGCAAGAAGGCATTGGACCAGCTGAGAATGATTTTGACTTCGATGGGTATTCCCTGGATAACGTTCCGGTCTAG 2037 0.4526 MNLSNGRGSMSTVTSGAAVKSADAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNTAEKALTLLRKNKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWRDTEQSGSAEEGDRQQKASDDADYSSSANESNWRNSKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNSSFMNPQDATFGTISSINGIDLQTLAAAGQLPAQSLATLQAAGLGRSAPKGGLPMPIMDQRNLFSFENPRLRFTEGQQQQQHLSNSKPVNLLHGIPTNMEPKQLASLHQSSQPLGNMTVRVNASTQSNPLLMQMAQSQPRGHMLSENTGPHLPRLPSSLGQPSASNGTSNALMGRNGIAGSTRAPGYNPISQSSSMMNFPINQTTEMPISSFPLGSTPGISSITTKGSFQEEVTSGIKRAGGFVPNYDIFSELQKPHDWEVSNPSLTYNAASQHANPLHGNIDVSPSVLVQQSFSSNQQTGQSRDANTMIVKPIFSASESMEQGTLQNQHLNTLVTDNSIRVKTERIPDASSQTNFYPEHYGQEDLMSALLKQQEGIGPAENDFDFDGYSLDNVPV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02600 678 CDD REC_typeB_ARR-like 35 149 - -
Adu01g02600 678 MobiDBLite consensus disorder prediction 189 210 - -
Adu01g02600 678 Gene3D - 210 272 - -
Adu01g02600 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 650 IPR045279 GO:0009736
Adu01g02600 678 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Adu01g02600 678 MobiDBLite consensus disorder prediction 433 458 - -
Adu01g02600 678 MobiDBLite consensus disorder prediction 155 210 - -
Adu01g02600 678 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Adu01g02600 678 MobiDBLite consensus disorder prediction 418 479 - -
Adu01g02600 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Adu01g02600 678 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Adu01g02600 678 PIRSF RR_ARR_type-B 10 670 IPR017053 GO:0003677|GO:0003700|GO:0009736
Adu01g02600 678 MobiDBLite consensus disorder prediction 155 176 - -
Adu01g02600 678 Gene3D - 33 171 - -
Adu01g02600 678 SUPERFAMILY CheY-like 32 156 IPR011006 -
Adu01g02600 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 650 - -
Adu01g02600 678 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Adu01g02600 678 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Adu01g02600 678 SMART REC_2 33 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02600 Adu-Chr1 95279878 95284281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02600 68 678 Response Regulator Gene Family AT3G16857 51.459 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Adu01g02600 Response_reg 3.9e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02600 - K14491 gmx:100814930 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02600 01 95279878 95284281 Adu01g02600 01 95279878 95284281 ECH
Adu01g02600 01 95279878 95284281 Adu04g00911 04 14321100 14325538 PCT