Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02592 ATGGTGGATTCAACTGGAAAAGGATCGGACTCCGATGATGCAAGCCCTAACTCCGCCGCCGCAGGTAAAAGTCCAACAACCGAGCAGAAGAAGACGTGCGCCGACTGCGGTACCTCCAAGACTCCTCTATGGAGAGGTGGCCCCGCCGGCCCCAAGTCTCTATGCAATGCCTGCGGGATCAGGAGCCGCAAGAAGAAGAGAGCCATACTCGGAATCGCAAGAGGAACCACCACCACCGACGATGTTAAAAAGGGGAAAAGAAGCAACACCGTCGCCAATAGTAATAATAACAAGTTTGGGGATAGCTTTAGTTTCAAGAAGAGGTGGATCACAATGGCGAGGCAGCGATCGAATCCTGCGCACACCCACAGGAACAAGTTGGGAGAGGAAGAACAAGCTGCTTTCCTGCTCATGTCTCTCTCTTATGGATCCGTTTATGCCTAA 444 0.5225 MVDSTGKGSDSDDASPNSAAAGKSPTTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGIARGTTTTDDVKKGKRSNTVANSNNNKFGDSFSFKKRWITMARQRSNPAHTHRNKLGEEEQAAFLLMSLSYGSVYA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02592 147 SMART GATA_3 27 83 IPR000679 GO:0006355|GO:0043565
Adu01g02592 147 MobiDBLite consensus disorder prediction 1 46 - -
Adu01g02592 147 MobiDBLite consensus disorder prediction 1 36 - -
Adu01g02592 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 67 - -
Adu01g02592 147 PANTHER OS01G0976800 PROTEIN 1 147 - -
Adu01g02592 147 Pfam GATA zinc finger 33 67 IPR000679 GO:0006355|GO:0043565
Adu01g02592 147 ProSiteProfiles GATA-type zinc finger domain profile. 27 63 IPR000679 GO:0006355|GO:0043565
Adu01g02592 147 CDD ZnF_GATA 32 67 IPR000679 GO:0006355|GO:0043565
Adu01g02592 147 ProSitePatterns GATA-type zinc finger domain. 33 58 IPR000679 GO:0006355|GO:0043565
Adu01g02592 147 Gene3D - 27 99 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02592 Adu-Chr1 95225139 95225798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02592 24 147 C2C2-Gata Transcription Factor Family AT5G49300 54.839 5.72e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu01g02592 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02592 - - aprc:113847917 176.792