Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02590 ATGGGAAGAGCTCCATGCTGTGAGAAAGTGGGGTTGAAGAGAGGAAGATGGACAGCTGAAGAAGATAGGATATTGACTCAATACATAGAAGAACATGGGGAGGGTTCATGGAGGTCGTTGCCCAAGAATGCTGGACTCTTAAGGTGTGGTAAGAGTTGCAGACTCAGATGGATAAACTACCTCAGATCAGATGTCAAGAGAGGCAACATCACTCCCCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGGCATTTACCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAACTCTCATCTCAGGAGGAAAATTTATTGCTTCATGAAATCTTTGAATGATTATTCCTCCTTCCCTCCCACCATTGACATTGCTGCATTAAAAGTTTCCAAGAGAAGAGCACCTACTCGATCTACTGCACCTAATAAGAACTTAGAATTAAGGGACACAAAAGAGGTGATAATGCTTCAACAACCAACCATTCAAAAGAATAATGCTGATCATGCTGATCATGAAGCTTTTAATGATGAGGAGTTGGGAGCATATGAATGGTTAGATGATGAAATAATGAAACTTAGTTACATGTTTGAGGGTGGTATGCTTGTAAACTATGGTGATAATAATAATGAAAATGATGAAGAGGAGAACAAGAGTGTTAGTGATTGGAACACTACTAGTGCTACTCCACCTCCAAGTTCTTCTTGTTCTTCTTCTTCTGTGAGTTCTGTGTATGATTGGCATCATCATCATGATATCCATTTGGCAAGAGGCAGTGCTCAATCCTATAATAATAATCAATGGGACCTTTTTGAACAAGATCAGATCCCTACTACCTTATGGGGTAGGTAA 882 0.4014 MGRAPCCEKVGLKRGRWTAEEDRILTQYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNDYSSFPPTIDIAALKVSKRRAPTRSTAPNKNLELRDTKEVIMLQQPTIQKNNADHADHEAFNDEELGAYEWLDDEIMKLSYMFEGGMLVNYGDNNNENDEEENKSVSDWNTTSATPPPSSSCSSSSVSSVYDWHHHHDIHLARGSAQSYNNNQWDLFEQDQIPTTLWGR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02590 293 CDD SANT 16 61 IPR001005 -
Adu01g02590 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu01g02590 293 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Adu01g02590 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu01g02590 293 Gene3D - 14 66 - -
Adu01g02590 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu01g02590 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu01g02590 293 CDD SANT 71 112 IPR001005 -
Adu01g02590 293 Gene3D - 71 116 - -
Adu01g02590 293 MobiDBLite consensus disorder prediction 217 251 - -
Adu01g02590 293 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 266 - -
Adu01g02590 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu01g02590 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu01g02590 293 MobiDBLite consensus disorder prediction 231 251 - -
Adu01g02590 293 PANTHER MYB TRANSCRIPTION FACTOR 2 266 - -
Adu01g02590 293 SMART sant 66 114 IPR001005 -
Adu01g02590 293 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02590 Adu-Chr1 95190649 95192191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02590 1 203 MYB Transcription Factor Family AT5G49330 55.349 2.87e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g02590 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02590 K09422 - gmx:100805532 333.183