Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02580 ATGGGTACAAGAGGAAAAAGGAGAGAGGGCGTACAGGAGAAAACCACAAAAGGGAAAAGGGAGACTGTGGCGGCGCTATGTCAGATGGCGGCTGGTGACTGTAGCGGCACGGCACTGGCAAGATTCGAGGAGAAAAGGAGAGAAGGAGAAAGGAGAAAACAGCTGACTGGAGAACAGAGTGGTGTTCAGCTTCGTCTCCACGATCATTTCTCTCATCCTTCTTCTAATCCCAATTCCCAACACACGCTTCTCTGTGTTTGGAATTTCGCAGAGGCTTATATGATGATGGCAAATAACTTTGCGGGCCGGTTGGTAGGCTCAGAGATTCATGGATTCCACACATTGCAAGACTTGGATTTGGGAAACATAATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCACGCCATACTTTGCAATTCCAAGTACTTCACAATCAATGTCAAGCCAGTGAATTTGCCCACATGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGGAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGTAAAACTGTTAAAGAAGCTCATGAGCACTTAAAGGTTGGTAACGAAGAAAGGATCCATGTCTATTATGCACATGGACAAGATAACCCAGGCTTTGTTCGTAGATGTTATTGGTTACTTGACAAGAGTTTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAGCTTCTCCTGCCGCACCCATAAATTCGCACTCTAGTTCTGGCTCTGACCCAAATGCCCCATGGATTTTATCCGAAGAAATAGATTCCGGGATCAAAACTACAAATGCTGGTGAGATTAATAACAATATAACCGTCAAGAATCACGAGCAAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCCTAACACGTCGACTATTAATGGAGGAGGCAAAGTTCCACATTTTGATCAACAGAATCAAAGTAATCTCAGCAATCAGGTAGCCAACAATCTTTCTGCAGAAATCCCTTCTTTTGATAATCTAACGCAACCAATTGCTGGGAGTCACACTTTTCCGGAGAATCTTAATCTTCAGACAGACAATCAAATGAATCCAAATGAGCAGATAAATCATAATGTCTTAGTTAATGGTGTTTCCTTGGACACTTTGGGCAATGGTGGATTGCAAAGTCAGGATAGCTTTGGAATGTGGGTGAACCATATGTTGTCGGATTCGCCATGTTCAGTAGATGAGTCAGCTGTTGAATCATCAGTGTCATCCATTCACGAATCATATTCATCTCTAGTAGGGGATGATAAGCAAACTTCTTTGCCAGAACAAGTATTTAATCTCACTGATGTGTCACCTGCATGGGTGCCTTCTACTGAGAAATCAAAGATCCTCGTGACTGGATTCTTTCATAAGGATGCTGACCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAATGTGTTCAGGTTGGGGTCTACCGATGTTGGGTACCTCCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAACCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTCTGCATGATCCTGTGGCTTTTATGGAAAACAATGACAACTGGGACAAGTTCCAATTCGAGATGAGGCTTTCTTATCTACTTTTTACCAAAAAGAATAGTCTTGATGTTTTCTCGTGTACAGTATCACCTAAGAGACTAAAGGAGGCGAGAAACTTTGCCATCAGAACGTCGTTTATTTCCAATAGTTGGCAATACTTGATGAAGTCAACTCAATACAACAGAATTCCGTATTCACAAGCAAAAGAAGACCTATTTGGAATTTCTTTAAGAAGCAGACTAAAGGAATGGATTTTGGAAAGAATTATTTTAGGCTGTAAGACTACTGAATATGATGCACAAGGCCAAAGTGTAATCCATTTGTGCGCGATTCTGGATTATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGACAAGCTTGGGTGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTTTTGTCGGCTGGGGCAAAGCCAAATTTGGTTACAGATCCAACTCCACAAAATCCTGGTGGACAAACTGCTGCTGATCTCGCATATATGAACGGTTATGATGGCTTAGCAGCATATCTTTCAGAAAAGGCTCTGGTGAGGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCCAGCTAGAAACCAACACAACTGACCCAGAAGATCCTGAGAACCTTTCAGAGGACCAGCTGTACCTGAAGGATACATTGGCAGCTTACCGAACAGCTGCTCAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCATTCCCTAAAACTGCAAACTGAAACCATTGAGCTTTTGACACCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCACGCCTTTAGGAACTTCGAGTCAAGGAAAATGATGAAAGCTGCTGCTCGCATTCAGTACACATACCGCACATGGAAGATTCGCAGAGAATTCCTCAACATGCGTCATCAGGCAATTAAAATTCAAGCTGCTTTCCGGTGCTTTCAATTGAGGAAGCATTATCGTAAAATTTTGTGGTCTGTCGGGGTGGTCGAGAAAGCACTATTGCGTTGGCGTTTAAAGAGAAAAGGTTTGCGTGGGCTGCATGTTAACAATGCCGATCAGAAGGAGGAAGGTGATGGAGAGGAGGAATTCTTTCGAATTGGTAGGAAGCAAGCTGAAGAGCGTGTTGAGAGATCTGTAGTGCGTGTGCAGGCCATGTTCCGTTCAAAGAAGGCACAACAAGATTATAGGAGGATGAAGCTGGCCCTTAATCAAGCAAATCTGGATCGGGAATATGAAGAATTCCTTGGTACGGAAGATAACATGGAAATTTAA 3006 0.4298 MGTRGKRREGVQEKTTKGKRETVAALCQMAAGDCSGTALARFEEKRREGERRKQLTGEQSGVQLRLHDHFSHPSSNPNSQHTLLCVWNFAEAYMMMANNFAGRLVGSEIHGFHTLQDLDLGNIMEEARTRWLRPNEIHAILCNSKYFTINVKPVNLPTCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQELQASPAAPINSHSSSGSDPNAPWILSEEIDSGIKTTNAGEINNNITVKNHEQRLHEINTLEWDDLVVANDPNTSTINGGGKVPHFDQQNQSNLSNQVANNLSAEIPSFDNLTQPIAGSHTFPENLNLQTDNQMNPNEQINHNVLVNGVSLDTLGNGGLQSQDSFGMWVNHMLSDSPCSVDESAVESSVSSIHESYSSLVGDDKQTSLPEQVFNLTDVSPAWVPSTEKSKILVTGFFHKDADLSKSNLLCVCGDVSVPVECVQVGVYRCWVPPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPVAFMENNDNWDKFQFEMRLSYLLFTKKNSLDVFSCTVSPKRLKEARNFAIRTSFISNSWQYLMKSTQYNRIPYSQAKEDLFGISLRSRLKEWILERIILGCKTTEYDAQGQSVIHLCAILDYTWAVSLFSWSGLSLDFRDKLGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGQTAADLAYMNGYDGLAAYLSEKALVRQFNDMSLAGNISGQLETNTTDPEDPENLSEDQLYLKDTLAAYRTAAQAAARIQAAFREHSLKLQTETIELLTPEAEARKIVAAMKIQHAFRNFESRKMMKAAARIQYTYRTWKIRREFLNMRHQAIKIQAAFRCFQLRKHYRKILWSVGVVEKALLRWRLKRKGLRGLHVNNADQKEEGDGEEEFFRIGRKQAEERVERSVVRVQAMFRSKKAQQDYRRMKLALNQANLDREYEEFLGTEDNMEI 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02580 1001 ProSiteProfiles IQ motif profile. 954 982 IPR000048 GO:0005515
Adu01g02580 1001 ProSiteProfiles Ankyrin repeat region circular profile. 690 718 - -
Adu01g02580 1001 Coils Coil 966 986 - -
Adu01g02580 1001 MobiDBLite consensus disorder prediction 1 20 - -
Adu01g02580 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 904 IPR027417 -
Adu01g02580 1001 Gene3D - 852 901 - -
Adu01g02580 1001 SMART CG_1_2 123 241 IPR005559 GO:0003677
Adu01g02580 1001 Pfam CG-1 domain 126 239 IPR005559 GO:0003677
Adu01g02580 1001 Pfam IQ calmodulin-binding motif 881 898 IPR000048 GO:0005515
Adu01g02580 1001 ProSiteProfiles IQ motif profile. 877 901 IPR000048 GO:0005515
Adu01g02580 1001 SUPERFAMILY E set domains 455 541 IPR014756 -
Adu01g02580 1001 ProSiteProfiles IQ motif profile. 838 864 IPR000048 GO:0005515
Adu01g02580 1001 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 109 1000 - -
Adu01g02580 1001 Gene3D - 632 760 IPR036770 -
Adu01g02580 1001 SMART iq_5 853 875 IPR000048 GO:0005515
Adu01g02580 1001 SMART iq_5 876 898 IPR000048 GO:0005515
Adu01g02580 1001 SMART iq_5 952 974 IPR000048 GO:0005515
Adu01g02580 1001 Pfam Ankyrin repeats (3 copies) 645 719 IPR002110 GO:0005515
Adu01g02580 1001 ProSiteProfiles CG-1 DNA-binding domain profile. 120 246 IPR005559 GO:0003677
Adu01g02580 1001 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Adu01g02580 1001 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Adu01g02580 1001 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 109 1000 - -
Adu01g02580 1001 SUPERFAMILY Ankyrin repeat 645 752 IPR036770 -
Adu01g02580 1001 Gene3D Immunoglobulins 450 544 IPR013783 -
Adu01g02580 1001 SMART ANK_2a 690 719 IPR002110 GO:0005515
Adu01g02580 1001 SMART ANK_2a 729 760 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02580 Adu-Chr1 95017942 95029093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02580 123 986 CAMTA Transcription Factor Family AT3G16940 55.825 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Adu01g02580 CG-1 3.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02580 K21596 - gmx:100793970 1390.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02580 01 95017942 95029093 Adu01g02580 01 95017942 95029093 ECH
Adu01g02580 01 95017942 95029093 Adu04g00877 04 13707111 13714124 PCT