Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02557 ATGGTACTCATGGAGCCTCCAACTCACGGTGTCACTTCCAAGTCACAACTCATCGATTATTACGCTAGCACTCTCCACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGTTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCGGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCACGAAGGTCTGCTATCGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTCATGGGAAACGAGAAGGATGCTCAGATGTGCATATATCATGTTTCTTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTATCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGACTATCGTTTTATACATCTGAGAAAACCTTACGCGCAGCATTTGAAGACTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACAGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCACCAAGGCACAACAGGGATCATGTCAGGCCATCAGTTTCACAAGCCAAAAGCCTTTTAAGGTATTAA 912 0.4101 MVLMEPPTHGVTSKSQLIDYYASTLHKVLASERDAQMCIYDVSCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGHEGLLSNSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGILSVQPDNNFESENKDYEGNNLENSLSQAAPLRTKKLFVTGLSFYTSEKTLRAAFEDFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRHNRDHVRPSVSQAKSLLRY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02557 303 SMART rrm1_1 203 276 IPR000504 GO:0003723
Adu01g02557 303 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 95 292 IPR039206 GO:0016554
Adu01g02557 303 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 95 292 - -
Adu01g02557 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 270 IPR000504 GO:0003723
Adu01g02557 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Adu01g02557 303 MobiDBLite consensus disorder prediction 283 303 - -
Adu01g02557 303 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 1 88 IPR039206 GO:0016554
Adu01g02557 303 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 1 88 - -
Adu01g02557 303 Gene3D - 175 298 IPR012677 -
Adu01g02557 303 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 78 IPR037045 -
Adu01g02557 303 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 87 174 IPR037045 -
Adu01g02557 303 SUPERFAMILY RNA-binding domain, RBD 194 289 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02557 Adu-Chr1 94882009 94882920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02557 202 289 C2H2 Transcription Factor Family AT2G19380 31.818 7.36e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02557 - - gmx:100791652 464.536