Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02538 ATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCTCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAATACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTCGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATATTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCTCCGAATGCTGGTTTTCGTGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAGCCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTTGTACCCTCAAGGTCCGACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCACTGCTGGTTCTCTACCTTCACAGCAGATTCATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCAGAGTTCTTTGGCTACTGCATTTCCTCAGGCACCTCTTGATACTAGCGGAAAATCTGGTACAACTTTGGCTACCTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAGCCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGAACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATGCCTTCCTCTGCATCTGCTTCTGCTTCTGCTGCTGTACCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATGCAGCAGTCTCAGTCTCAGTCACAGTCACAGCCTTCAGTAGTATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCGGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGGCATCCAAACTTCTCAAGAGTGGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2214 0.486 MTYHNSRRSPAHFRSGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFRAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPASQQQQIAPLHKPTQSSQELPPSHQLYPQGPTPYLQTPPPSSVRHPGQPQLPLTAGSLPSQQIHSMSGQFPTSQPQAQQSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEMPSSASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSMQQSQSQSQSQPSVVSAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQGIQTSQEWMWKNKPAGV 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02538 737 MobiDBLite consensus disorder prediction 359 403 - -
Adu01g02538 737 MobiDBLite consensus disorder prediction 633 662 - -
Adu01g02538 737 MobiDBLite consensus disorder prediction 404 424 - -
Adu01g02538 737 SUPERFAMILY RNA-binding domain, RBD 62 172 IPR035979 GO:0003676
Adu01g02538 737 MobiDBLite consensus disorder prediction 1 46 - -
Adu01g02538 737 Pfam WW domain 598 625 IPR001202 GO:0005515
Adu01g02538 737 ProSiteProfiles WW/rsp5/WWP domain profile. 594 627 IPR001202 GO:0005515
Adu01g02538 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 168 IPR000504 GO:0003723
Adu01g02538 737 MobiDBLite consensus disorder prediction 257 293 - -
Adu01g02538 737 MobiDBLite consensus disorder prediction 344 507 - -
Adu01g02538 737 CDD RRM2_FCA 179 258 IPR034645 -
Adu01g02538 737 CDD WW 597 627 IPR001202 GO:0005515
Adu01g02538 737 MobiDBLite consensus disorder prediction 431 507 - -
Adu01g02538 737 ProSitePatterns WW/rsp5/WWP domain signature. 600 625 IPR001202 GO:0005515
Adu01g02538 737 SUPERFAMILY RNA-binding domain, RBD 178 279 IPR035979 GO:0003676
Adu01g02538 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 258 IPR000504 GO:0003723
Adu01g02538 737 SMART ww_5 595 627 IPR001202 GO:0005515
Adu01g02538 737 Gene3D - 83 174 IPR012677 -
Adu01g02538 737 SUPERFAMILY WW domain 599 632 IPR036020 GO:0005515
Adu01g02538 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Adu01g02538 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 152 IPR000504 GO:0003723
Adu01g02538 737 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 58 687 - -
Adu01g02538 737 Gene3D - 596 641 - -
Adu01g02538 737 SMART rrm1_1 88 164 IPR000504 GO:0003723
Adu01g02538 737 SMART rrm1_1 179 254 IPR000504 GO:0003723
Adu01g02538 737 Gene3D - 175 265 IPR012677 -
Adu01g02538 737 PANTHER TRANSFORMER-2-RELATED 58 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02538 Adu-Chr1 94616640 94625929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02538 89 297 Eukaryotic Initiation Factors Gene Family AT2G23350 24.651 2.70e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02538 - - gmx:100798390 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02538 01 94616640 94625929 Adu01g02538 01 94616640 94625929 ECH