Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02513 ATGTCAGATTCAAGCCTTAGTACGGTTGGTGCAACGAGCCAACAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAAAAGTTGGATTTAAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGTTGGTAGTGGAGAATATGGTGGTGAGAAATTGGGTGGTGAAGGTGGTTGTGTCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATAGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGCTAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAATGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAAGTATTAATTATTCTTCTGTTCCTATTATCAATCTAA 600 0.41 MSDSSLSTVGATSQQPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVVGSGEYGGEKLGGEGGCVPKTGEAQGSDDNDGWDDDEGYSWNENVKESEVAKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSNGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQVLIILLFLLSI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02513 199 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 189 - -
Adu01g02513 199 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Adu01g02513 199 SUPERFAMILY CCCH zinc finger 155 184 IPR036855 GO:0046872
Adu01g02513 199 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Adu01g02513 199 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 181 IPR000571 GO:0046872
Adu01g02513 199 Gene3D - 128 188 - -
Adu01g02513 199 MobiDBLite consensus disorder prediction 1 22 - -
Adu01g02513 199 MobiDBLite consensus disorder prediction 99 116 - -
Adu01g02513 199 MobiDBLite consensus disorder prediction 23 60 - -
Adu01g02513 199 MobiDBLite consensus disorder prediction 1 151 - -
Adu01g02513 199 PANTHER PROTEIN PHOSPHATASE RELATED 9 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02513 Adu-Chr1 94261718 94263919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02513 152 184 C2H2 Transcription Factor Family AT1G29570 54.545 3.96e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g02513 zf-CCCH 1.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02513 - - adu:110280340 273.478