Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02471 ATGTTGCAGCGAAATTCCAATATGACCAGGGGCTATGTCTTTGACCTTGAACAAGTTCCTGCATACTCATGCTTTATAGGCTATGTTTCATGGCAGGTAATAATTTCTGCTTTTCGGAGAATCCCTAGATCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTTCCGCTTTCTTCCTTATCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGTTGGTAAATGATACATTTGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 753 0.4223 MLQRNSNMTRGYVFDLEQVPAYSCFIGYVSWQVIISAFRRIPRSSWNAKERLWMFPLSSLSEAEKVLGEISNYKVQAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQLVNDTFGMWCNSNRIIWGQVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02471 250 Pfam Helicase conserved C-terminal domain 74 175 IPR001650 -
Adu01g02471 250 CDD SF2_C_SNF 65 176 - -
Adu01g02471 250 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 32 73 IPR030101 GO:0006281|GO:0031297|GO:0036310
Adu01g02471 250 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 75 237 IPR030101 GO:0006281|GO:0031297|GO:0036310
Adu01g02471 250 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 62 212 IPR001650 -
Adu01g02471 250 SMART helicmild6 92 175 IPR001650 -
Adu01g02471 250 Gene3D - 40 182 IPR027417 -
Adu01g02471 250 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 32 73 - -
Adu01g02471 250 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 75 237 - -
Adu01g02471 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02471 Adu-Chr1 93759036 93761683 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02471 79 176 RAD5 or RAD16-like Gene Family AT1G02670 34.694 3.31e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02471 K14440 - adu:107484479 268.085