Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02453 ATGGCTAGCACCTTCAACAATGTCAAGGACATTGATGCATCCCATGACAACTTGAGCTATAGGATCAAGGTGCGTGTGATTAAGATTTGGACTCTATTTACGGCTGAGCAGAAATTTCAAAAGCCAATGCTGGAGCTGGTGGTCATGGATAATCAGGGAGATCGGATCCAATGTTCAATTCGAAACCCTCATAGGAGGTTATTTGAGGCCGACCTTACCGAGGGGAAAATATACACTATCTTCAATTTTTCAGTTGCTCAGAATGACCTCAAGTACAAAGCCACCAATCATGTTAGCAGAATATATTTTAAGAGAGATACCCAGCTTAGGGTGGTTCAGGATCCTCTATTCCTTACACATATTTTTCGCTTTGTGCCCAATGAAGTAATACTTAACCACACCAATGCTCAGTCCCATTTAATTGATGTAATTGGGCTCCTCACTGCTAAGGGTGACATTATTGAATTCACAAAGAATGGAAAGAAGTCCATCTACATTGTCATAGAACTTGATGACCTGAGCACGGCCATTAGAGAAAATCATGGCAAGTGGCAACCCTACTCGGCGCCACAACACTCAGGCCATGTCGATCACCACGGATGGCAACAGCTTGAATCTAGACCGGTGGATGTGACAAGAGAACATGGGCACAAATACGGGGAAGGATTTGCCGTGGATCATTCATGGGAGTTGGGTACAATGGGTATATCAAACACCAACTACAATTCCATTCTGCACATCAACGGTGATTTTCAAGAGGTCAAGGATTTTCGCAAGAGTGTCATAATATCAGGTGTACCTGCTGCAACTCAAGTTTCTCAAATACCGGGAGAGCCGACATATTCACTCGAAGAGGACCTACTTAACCATTCCATTTATAAGCCCATCTCCGAGCTAAAGGATTCAATTGAGATTAATATAACCAAACATGCAGAATGGCTCTTTGTCACTATTGGCACGGTTATATCCATTGATCCTAAGAATGGGTGGTGGTACAAGAGTTGCAAGCATTGCTTCCATTCTTTACAAGAAGCCGAGAACTCATACCACTGTGCTAGGTGTGAGACATACCCATCGTCTCACACTCCAAGGTTTAGCATAAACATGCGAGTTGCTGATGAGACCGATACGGCTTCTTTCCTACTGTACGATAAGGAGGCGTCCAAATTCCTTGGTATATCCGCATCCGATCTCAGACTCGCACAACTAACCAGGGGTGGAGTTAACAAGGAATATCCAACAGAGCTTAACTCACTgttcaactccggatcatga 1275 0.4306 MASTFNNVKDIDASHDNLSYRIKVRVIKIWTLFTAEQKFQKPMLELVVMDNQGDRIQCSIRNPHRRLFEADLTEGKIYTIFNFSVAQNDLKYKATNHVSRIYFKRDTQLRVVQDPLFLTHIFRFVPNEVILNHTNAQSHLIDVIGLLTAKGDIIEFTKNGKKSIYIVIELDDLSTAIRENHGKWQPYSAPQHSGHVDHHGWQQLESRPVDVTREHGHKYGEGFAVDHSWELGTMGISNTNYNSILHINGDFQEVKDFRKSVIISGVPAATQVSQIPGEPTYSLEEDLLNHSIYKPISELKDSIEINITKHAEWLFVTIGTVISIDPKNGWWYKSCKHCFHSLQEAENSYHCARCETYPSSHTPRFSINMRVADETDTASFLLYDKEASKFLGISASDLRLAQLTRGGVNKEYPTELNSLFNSGS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02453 424 CDD RPA1_DBD_A_like 21 107 - -
Adu01g02453 424 PANTHER REPLICATION FACTOR A 1, RFA1 19 171 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu01g02453 424 PANTHER REPLICATION FACTOR A 1, RFA1 315 414 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu01g02453 424 Gene3D - 288 422 IPR012340 -
Adu01g02453 424 PANTHER BNAC01G35430D PROTEIN 19 171 - -
Adu01g02453 424 SUPERFAMILY Nucleic acid-binding proteins 5 115 IPR012340 -
Adu01g02453 424 PANTHER BNAC01G35430D PROTEIN 315 414 - -
Adu01g02453 424 Gene3D - 6 114 IPR012340 -
Adu01g02453 424 CDD RPA1_DBD_C 296 398 IPR013955 -
Adu01g02453 424 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Adu01g02453 424 Pfam Replication factor-A C terminal domain 316 400 IPR013955 -
Adu01g02453 424 SUPERFAMILY Nucleic acid-binding proteins 294 399 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02453 Adu-Chr1 92447988 92451763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02453 19 416 Core DNA Replication Machinery Family AT5G08020 20.863 4.94e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02453 - - ahf:112707100 535.028